CI01000016_09410080_09416286 (NCALDA, NCALDB, HPCAL1, NCALD.L, NCALD)


Basic Information

Item Value
gene id CI01000016_09410080_09416286
gene name NCALDA, NCALDB, HPCAL1, NCALD.L, NCALD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9409906 ~ 9417767 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09410080_09416286.mRNA
AGACTGAAAACCACATAGATGTAGCTCAGAAATCACAATCTTAAAAATAAAGGTTAATTATTGACATTGATGGTTCCATGCAGAACCTTTACTGCCCATGGGACCTTTCCATTGCAAAAAAGGTTCTTTAGATATTTGAAATGACTAGGGGGAAAAAATGTTGTTTTTTGGCATCGCTGTGAAAACTGCATTTTAGAAAAAACAATCGGTTCACTCTGAGCAGAATCAGTATTTAAACATTTCTGTTTATGCGTTCCTTCTGTAACATTACCATTCAGAAAACGGTCGTTGGCAATACAGCCTGTGCAAAACAATATAAAACTTTTATATTACAAGATTTTGGCCAAATGTATTAAACGAAAGGAAAAACTGAGCAGCTACACAGCTACAATAAACTTTGAATCCTGTAAGTTGATTATGTTTGACCATACATAAAGCCACAATAATAATTTAAATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTCATCTCTTGAATGGTAGCTTTTCTACACTAACCTGCAATTTTCACTGGTTTCAAAACACACCAAGCTGGATATTACCTGCCATTCATTTTCACTTAAATGTAGTGCTTTAACAGTTGGTGACATTTTCTGAAAAACTCCTGAGATCCAAAAGCTAATGCCAGTGCATTGCTATTGCAACTTAGCTATGATGAGTTGACAGCTGAGCATGGGCATTTCACTCACGTTGGATGCGTCAGCATCACATTTTTTTTGCATAGGCCGTACTATTTGAATTTACAATTGGTTGACTGCCAAATTGAAATATTGAAAAGAACCATAAAATAATATTATTAACTGGTTAATGGTCAGAACGATTAAACTTAATTTCATTTTTGTTTGTTCCTGTTAATTTTATTAGTTTCCGTTTTTGTTTTCGTTCCTTGAACTGGTTTAGAGCCCTAATCTAGGGTACTCTTATGAACTAAATTGAAATGTGGATGATGGCACTTTGTCAAAATAGGGCTGTTATTGTATTCTTGACTGTGCCACAAATAAATTTGGATGATGGACATTTTACATAAAGGATCATAGCAGAATAGGGTACCACAATATGTAGAGATGAATGTATAGAGCTTTCCATCTATACTCATTTTCTCTCTTCCCTTTCTTTCGCCAGCGCTGTCTCGTGAAACGAAAACATGGGGAAGCAGAACAGCAAGCTCCGCCCTGAGGTGATGCAGGACCTGCTGGAGAGCACGGACTTTACGGAGCATGAGATCCAGGAATGGTACAAAGGCTTTCTACGGGACTGTCCCAGTGGCAACCTCTCCATGGAGGAATTTAAGAAAATCTACGGAAACTTCTTTCCTTATGGAGACGCCTCAAAGTTTGCAGAGCACGTGTTCCGTACTTTTGATGCGAACGGCGATGGCACGATAGACTTTCGGGAGTTCATAATTGCACTGAGTGTCACGTCACGAGGGAAGCTGGAACAAAAGCTCAAGTGGGCGTTTAGCATGTATGATTTGGATGGAAACGGATACATCAGCAAGTCAGAGATGCTTGAGATTGTGCAGGCGATTTATAAGATGGTATCATCAGTGATGAAGATGCCAGAGGATGAGTCCACACCTGAGAAGAGAACAGAGAAGATCTTCAGACAAATGGACACCAACCGGGATGGGAGACGGCAGTGCCACCTGCTGACTGATGCTGTACATGCCACTTTTGGGGAGCTTCAGTCACTACATGTTTTTAGGGATGCCCCATATGAAAAATCGATCCTCTCATATTATGTCCGATATTAAAATGTTACTATTTTTGTTGAAATAAAATAACAATAAAAACTAAAATAAATGATTTTAAGTCAATTTAGAAACATTATAATAAACAGTTTATAAATGGATATTGATTTTGAGATTACAGATTAAAGATTACATTTAATAGTGTTATTAATTACTTTTTTTTTAAAAAATAAAAAA

Function

symbol description
ncaldb Predicted to enable calcium ion binding activity. Acts upstream of or within regulation of axon extension involved in axon guidance. Is expressed in eye. Orthologous to human NCALD (neurocalcin delta).
ncalda Predicted to enable calcium ion binding activity. Orthologous to human NCALD (neurocalcin delta).
hpcal1 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL1 (hippocalcin like 1).
ncald Enables actin binding activity; clathrin binding activity; and tubulin binding activity. Predicted to act upstream of or within calcium-mediated signaling and regulation of systemic arterial blood pressure. Predicted to be located in cytosol.

GO:

id name namespace
GO:0003073 regulation of systemic arterial blood pressure biological_process

KEGG:

id description
K19695 NCALD; neurocalcin delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09410080_09416286.mRNA True 2264 mRNA 0.31 3 9409906 9417767

Neighbor

gene id symbol gene type direction distance location
CI01000016_09384358_09401878 GRHL2A coding downstream 8028 9384162 ~ 9401878 (-)
CI01000016_09376209_09382250 TAPBPL coding downstream 27656 9376209 ~ 9382250 (-)
CI01000016_09251602_09253351 NA coding downstream 156555 9251412 ~ 9253351 (-)
CI01000016_09224593_09226660 NA coding downstream 183246 9224467 ~ 9226660 (-)
CI01000016_09212039_09212358 NA coding downstream 196736 9211997 ~ 9213170 (-)
CI01000016_09475913_09487996 NA coding upstream 57230 9474997 ~ 9488292 (-)
CI01000016_09510177_09512196 ID4 coding upstream 91892 9509622 ~ 9512428 (-)
CI01000016_09638800_09651752 CEP76 coding upstream 220825 9638592 ~ 9651752 (-)
CI01000016_09654611_09661197 NA coding upstream 235735 9653502 ~ 9661197 (-)
CI01000016_09739013_09746676 NA coding upstream 321246 9739013 ~ 9746676 (-)
G98853 NA non-coding downstream 12387 9356362 ~ 9397519 (-)
G98808 NA non-coding downstream 64458 9344604 ~ 9345448 (-)
G98838 NA non-coding downstream 83666 9325886 ~ 9326240 (-)
G98809 NA non-coding downstream 84208 9325167 ~ 9325698 (-)
G98802 NA non-coding downstream 85411 9317571 ~ 9324495 (-)
G98878 NA non-coding upstream 62627 9480394 ~ 9480627 (-)
G98885 NA non-coding upstream 71798 9489565 ~ 9489806 (-)
G98887 NA non-coding upstream 75876 9493643 ~ 9493939 (-)
G98898 NA non-coding upstream 95998 9513765 ~ 9513998 (-)
G98691 NA other downstream 152295 9256102 ~ 9257611 (-)
G98679 NA other downstream 169977 9234996 ~ 9239929 (-)
CI01000016_08926089_08945071 NA other downstream 464677 8925960 ~ 8945229 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other downstream 515169 8888833 ~ 8894737 (-)
G97341 NA other downstream 3250185 6158986 ~ 6159721 (-)
G99178 NA other upstream 396594 9814361 ~ 9814955 (-)
G100190 NA other upstream 633401 10051168 ~ 10052389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010464 ncalda coding NC_007127.7 CM002900.2 9833256 ~ 9897769 (-)
bowfin (Amia calva) AMCG00011065 hpca,LOC105005722,LOC103394251,LOC101072338 coding CM030133.1 CM030133.1 9391398 ~ 9409014 (+)