CI01000016_12012874_12083297 (TAF2)


Basic Information

Item Value
gene id CI01000016_12012874_12083297
gene name TAF2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 12012874 ~ 12083297 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_12012874_12083297.mRNA
TATGTGGAGCTGACCATTTTTCCAACAGTGATGAACCTGAACCGTATTAAATTGAACAGCAAACAGTGCCGTATCTACAGGGTGAGAGTGAATGATCTTGAAGCTCCATTCATTTACAATGATCCCACGCTGGAGGTGTGCCATCATGAATCCAAGCAGAGGAACCTGAACTATTTCTCCAGTGCTTACACAGCAGCAGTTAGTGCTGTGGATCCAGATGCTGGGAATGGGGAGCTTTCCATTAAAGTTCCTTCTGAGCTCTGGAAACAGGGAGATGAGATGAAAGTTATGAAAGTTTACATTGAATTCTCATTGGATCAACCGAAAGGAGGGTTGCATTTTGTAGTACCTGATGTGGAAGGAAGTATGGCAGAAAGAGCAGCCCATGTTTTCTCCTTTGGCAACCAGAATTCCACACGGTTCTGGTTTCCATGTGTTGACTCATACTCTGAGTTGTGCACATGGAAGCTGGAGTTTACTGTGGATGCCTCCATGGTGGCAGTGTCCTGTGGGGACCTAGTGGAGACCGTCTACACCCACGATATGCGCAAGAAGACCTACCACTACATGCTGCCCATCCCCACTGCCGCCCCTAACATTTCCCTGGCTGTGGGGCCCTTCGAGATTCTGGTGGACCCCTACATGCATGAGGTGACTCATTTTTGCTTGCCTCAGCTTCTGCCCCTCCTGAAGCACACTATGTCCTACCTGCATGAGATTTTTGAGTTCTACGAGGAGATTCTCACCTGTCGCTACCCATATTCTTGCTTTAAGACCGTCTTTGTGGATGAGGCTTATGTGCAGGTCTCATCATATGCATCAATGAGTATTTTCAGTACCAACCTCCTGCACAGTGGTATGATCATAGATCAGACTCCTATAAGCAGGCGCTTTCTGGCTCAAGCTCTGGCCCAGCAGTTTTTTGGTTGCTTCATCTCTAGGATGTCCTGGTCTGATGAGTGGGTTTTGAAGGGAATTTCAGGATACATTTATGGCCTCTACCTGAAGAAAACATTTGGAGTCAATGAGTATCGTCACTGGATTAAGGAGGAACTGGACAAGATTGTGGATTATGAGCTAAAAATGGGCGGCGTCCTGCTGCACCCCACCTTTTCTGGAGGAAAAGAAAAAGACAATCCAACTCCCCACCTTCACTTTTCCATCAGACACCCCCACACATTGTCCTGGGAATATTACAAGATGTTCCAATGCAAAGCCCACCTGGTCATGAGGCTCATCGAAAACCGAATTAGCATGGAATTCATGTTGCAGGTGTTTAACAAGCTCTTGAGTCTGGCCAGCACAGCCTCATCTCAGAAATATCAGTCTCACATGTGGAGCCAGATGCTGGTATCCACCTCTGGATTCCTCAAATCCATTTCCAACGTGTCAGGGAAGGACATCGGACCCCTCATCAAGCAATGGGTAGACCAGAGTGGGGTGGTAAAATTTTTTGGAAGTTTTGCCTTCAACAGGAAAAGAAATGTTTTGGAACTAGAGATCCGTCAGGACTACACTTCGTCTGGCACACAGAAATATGTGGGCCCTATTAAAGTGACAGTACAGGAATTGGATGGGTCATTTAACCACACATTGCAGATAGAGGAGAACAGTCTAAAACATGACATTCCCTGCCACTCCAAAAGCAGAAGGAACAAGAAGAAGAAAATCCCTCTGATGAATGGAGAAGAAGTTGACATGGACTTGTCAGCCATGGACGCTGACTCTCCTCTGCTGTGGATCCGAATTGATCCAGACATGTCCATCCTTCGGAAGGTAGAGTTTGAACAGGCCGATTTCATGTGGCAGTACCAACTGAAGTTCGAGAGGGATGTAGTGGCCCAGGAGGAGGCTATTTCAGCGTTGGAAAAATTTCCCACTCCTGCATCACGACGTGCTCTTACGGATATCCTAGAACAAGACCAGTGCTTTTATAAAGTCCGCATGCAGGCCTGCTTCTGTCTGGCTAAGATTGCTAATTCCATGATGAGCACCTGGACTGGCCCCCCAGCCATGAAGTCTCTCTTTACACGCATGTTCTGCTGCAAAAGCTGCCCAAATATCGTCAAGACCAACAACTTCATTAATTTTCAGAGCTACTTCCTGCAAAAGACTATACCTGTGGCCATGGCTCTGCTAAGAGATGTTCAGAATCTTTGTCCCAAAGAGGTCCTGAACTTTATACTGGACCTCATCAAATACAATGACAACCGGAAGAACAAGTTTTCTGATAATTATTATCGTGCCGAGCTGATTGATGCCCTGACAAATTCACTGACTCCTGCCATCAGCATTAATAATGAGGTGCGCACAGTGGACAACTTGAATGCAGATGTTCGCCTGATCTTGGAGGAAATCACACGCTTCCTTAACATGGAAAAACTGCTGCCAAGCTACCGTAACACCATAACAGTCAGTTGCTTGCGGGCCATTCGCATGCTACAAAAGAACGGCCACATCCCCAGTGATCCCAGCCTGTTCAAGACCTACGCTCAGTATGGCCACTTTGTGGATGTGAGGATTGCAGCACTGGAGGCTGTAATAGACTATACAAGAGTTGATAGGAGTTCCAGTGAACTTCAATGGCTTCTGGATCTGGTACAAAATGACCCAGTTCATTACATAAGGCATGAAATTCTCAGCATGCTTGCCAAGAATCCACCTTTCACCAAAGCAGCGGATTCTTCGTTGTGTAACGAAGCTTTAGTGGACCAACTATGGAAGCTGATGAACTCAGGTACCTGTCATGATTGGCGTTTGCGATGTGATGCCGTAAATCTGTACTACACTCTGTTTGGGCTGACCCGACCCTCCTGTCTGCCGTTGCCAGAGTTGGGTCTCGTGCTGAACCTGAAGGAGAAAAAAGCTGTTCTCAACCCCACCATCAAATCTGAGCAGGGCCCTGGTGGCCCTGAGGTGACCTCGAACATTACCTTCACCAGCGCTCTGGAGGAGGAGCATGTTATCATGGAGCCAGCATTGAGTGGTGTGGCCATGGCCCCACAGGGTTTAAAGAGGAAGGCAGAGACTCCATTAGGTTCATCCCCTGAACCTGGACAAGTTATGCAAGAGGAACCCAGTGCTAAAGCATCTGTGAAGAGCAGAGAGGAGGAAGATATTGATATGGACACAGTTCATGACAGCCAGGCATTCATCTACCACCATCTGAACATGTTGGAAAGACCTTCAACTCCAGGCATGACAAGACAAATTCAAGCCATTTTGTCTATGCCAGGAACACCCATGCCCACATTGAGCAAAGACAGCACATCCTCCAAACATGGAGATCACCACCACCACCATCATCATCATCATGAGCACAAGAAGAAGAAGAAGAAGCACAAACACAAACATAAACACAAACACAAGCATGAGAGTAAGGACAAAGATAAAGACAGAGATTCTCACGCTTTTAGTAACAGCCCTGCCAGTGGCCGCTCCATTCGTTCTCCATCTCTATCTGAC

Function

symbol description
taf2 Predicted to enable chromatin binding activity and transcription cis-regulatory region binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TAF2 (TATA-box binding protein associated factor 2).

GO:

id name namespace
GO:0051123 RNA polymerase II preinitiation complex assembly biological_process

KEGG:

id description
K03128 TAF2; transcription initiation factor TFIID subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_12012874_12083297.mRNA True 3465 mRNA 0.47 24 12012874 12083297

Neighbor

gene id symbol gene type direction distance location
CI01000016_12006986_12008107 NA coding upstream 3728 12006360 ~ 12009146 (+)
CI01000016_11949149_11958553 CA14 coding upstream 54156 11949149 ~ 11958718 (+)
CI01000016_11554406_11667350 DNAH5 coding upstream 345147 11554406 ~ 11667727 (+)
CI01000016_11499086_11499455 NA coding upstream 513265 11498878 ~ 11499609 (+)
CI01000016_11344848_11345696 NA coding upstream 667005 11344452 ~ 11345869 (+)
CI01000016_12087864_12111652 ENPP2 coding downstream 4567 12087864 ~ 12111772 (+)
CI01000016_12124439_12128957 NA coding downstream 40288 12123585 ~ 12129766 (+)
G100149 NA non-coding upstream 21807 11990169 ~ 11991067 (+)
G99971 NA non-coding upstream 112826 11897986 ~ 11900048 (+)
G100046 NA non-coding upstream 316413 11690095 ~ 11696461 (+)
G100010 NA non-coding upstream 393884 11618788 ~ 11618990 (+)
G99884 NA non-coding upstream 617275 11394825 ~ 11395599 (+)
G100162 NA non-coding downstream 59688 12142985 ~ 12143342 (+)
G100164 NA non-coding downstream 65221 12148518 ~ 12148815 (+)
G100173 NA non-coding downstream 73723 12157020 ~ 12157594 (+)
G100176 NA non-coding downstream 75585 12158882 ~ 12159090 (+)
G100178 NA non-coding downstream 77344 12160641 ~ 12162845 (+)
G99940 NA other upstream 340001 11671645 ~ 11672873 (+)
G99456 NA other upstream 1713970 10294391 ~ 10298904 (+)
G99410 NA other upstream 1776023 10234400 ~ 10236851 (+)
G99041 NA other upstream 2087220 9924418 ~ 9925654 (+)
CI01000016_09796196_09842235 NA other upstream 2215934 9795950 ~ 9842576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009706 taf2 coding NC_007127.7 CM002900.2 9580699 ~ 9606284 (+)