G93070


Basic Information

Item Value
gene id G93070
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 14060 ~ 15901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU105912
TGTGGTATGGACTCTGCTATTCTTTTACATTTAGAGCAGTTTATATAACTATATCTTTATCATTATAGTTATTGTTCTTGGTGTGAATGGGCCTTAACTTCTTGTTGGTTCTTCTTACACTGAGTATCAGCCTATGGCCGATTCACAGTTCAACAGTTATTCAGTGTAAACATTTATGTGGGTGTGTGGCTGAGAGGGCTATTACCGTGTGAGTGCACTACCAATCTGTGTGCGGATGGCCTCCCACTGCTCCTTGCTCTGCCACGACAGACCCGTGTGCTCTACTTTGGCCTGCCTCTCAGGAGCCTGTCTGTCTGGGGCAGAGGGCCGACTGCTCAGCTTCAGCGCCAATGTGTCCTTCCTTTTCACCCTGCTGGCCAGAGCACTTGGTGGGCTATCATCCTCCTCGTCTTCATCTGATTCATCATCCTTGTACAGCACGGGTCCGTCTGAATCGCTCTCCTCTGGCTGCTGATCTTCCTCATCTTCCTCTTCCTCGCTGCTGTTGTTTCCTTCAGGGATGATGCTGACGCTCAGGTCCCCCACCAGACATCTGCGGCTACGAGGCTCAAGTTCTGGCTGGGACTGAGGGGATGGGAGGTGATTAGGTGGACGTTCCTCATCATCATCATCATCGTCATCCTCTTCCTCCTCCTCTTCATCAGAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU105912 True 668 lncRNA 0.50 2 14060 15901

Neighbor

gene id symbol gene type direction distance location
CI01000016_00042281_00046080 NA coding downstream 26343 42244 ~ 46182 (+)
CI01000016_00104268_00104615 NA coding downstream 84636 100537 ~ 105049 (+)
CI01000016_00116237_00122376 NA coding downstream 99262 115163 ~ 123774 (+)
CI01000016_00200989_00201760 STMN1, STMN1A, STMN1B coding downstream 184820 200721 ~ 202139 (+)
CI01000016_00206576_00207640 PAQR7B coding downstream 190675 206576 ~ 207935 (+)
G93071 NA non-coding downstream 7759 23660 ~ 27896 (+)
G93072 NA non-coding downstream 40578 56479 ~ 56936 (+)
G93133 NA non-coding downstream 113412 129313 ~ 130160 (+)
G93086 NA non-coding downstream 138062 153963 ~ 154680 (+)
G93143 NA non-coding downstream 161098 176999 ~ 187671 (+)
G93406 NA other downstream 889499 905400 ~ 927532 (+)
G95439 NA other downstream 3846274 3862175 ~ 3862305 (+)
G95648 NA other downstream 4256735 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 4818657 4829592 ~ 4837457 (+)
G95792 NA other downstream 5203979 5219880 ~ 5225941 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G73123 phactr4 unknown NC_053118.1 CM020915.1 17645513 ~ 17647186 (+)