G93835


Basic Information

Item Value
gene id G93835
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 199158 ~ 202946 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU106770
TCCATTTTTATTTTATTCAATTAAAAAAACATTTATTCACACAACATATTAGTGGACATGATCTATTTTTGGATGCATGTAATTGCTTCTACTAAGGGAGTTCAGAATTTTGGAAATAAGGTATAATTTATTTTAGAAAAGATTGATGCACTATTTCTGAACACAATAATATGAAAGCATGTGGACAACAAGCCATTCATCATTGCAAAGCTGTTTACAACTTCCATAAATTGTCATGCACCTAACTCTCTTTTGGCAACAAAGGATAAATCAATAATAGTTGCCAATATGTCAACGTTATTTTATTTTTTCTGAAATCATTTTGAGATGATTCATGATGAAAAAAAAATTCTAATACCTGTTTAATACCTGTCAAAACCACTAGATGCCAGTATAGTCTCAAGCGATGTATTTTTATATTTTTTTAAACTCACACCTTTCCAAGTACTTATCGGAATGCATACATTTTTTTGTTGTTGTTGTTGTTTTTTTTCATTAGTGCATATTAGGTATGAATTACTATGAAGGTATGATCCAGTAAAGGAAAAGCTTGTGGATAATGTTTAGTATTAACACTAAGAGTCTCATGCAGATTATAAAGAGTACATCAAAAAGTGTCCAAAAAGATTTAATTATTATTTTGGCAAAACCTTTTTTTTATATAGAATTACAGAAACTGCCATACATCTCCATAATGTACACATTTTTAAGAAATTATTTTACTCCACATTACACTCTGGCTGACTGCAGATTAACAAAGAAGCAGTGGCAAAACTGGTACCATAACAAACAACTGTGCAACTTTATTAAGCTTGAAGGATGGCAGTACTGACATACAAGGGAACAGGTGGACTTGCACAATGCAATATACCAAGTATATATTAGACCTATGCATAACACAGGCATGCTTCCCTATCAGTAAAACACTGCTCATTTTAAACGCTATAGAGCTGCAACTGGACAAATCTACAGGTTAGAGGGAATGATGAAAGACAGAACTGAATACACACAAAGTGATGAAATGTTGTGCACCAGCTTTTCCCCAAAACCCCTTAATAAAAAAGTGGCAAGTACATGGATCCAAACATGGAAAACTGACCATTTAATGGAACAAAAAATAAATCTTTGGATACATTAAAAAACCCAATACTATACCCTAAATGAAAAGGAAAATGAGAGAGGAAACTTAGTTTTCACCCTCGCCCCCCTCTTTTGTTTCTTTGTTCTTTCGTACCTCTTCAAGCTTCTTGTCCTTCTCTTTGAATTTCTCATTCATAGCTGCCATGCGTGCTGTGCGGTTTTCTTTGTTGGCTTCCATTTTCTGGTTAAGCTTCTCCTCTGCCATCTTGCTGAAGTTGTTGTTCTCCTCCATTGCTTTCTGAAGGACCTCCTTCTCATGCTCTCGTTTCTCAGCCAAATGCTTCAGGACCTCTGCCTCATGGTTCTTGCGTCTCTCCTCTGCTGCGTCCAGTTTTTTCTGGATCTCGTCCAGAGATACCTCCTTCTTCTTGGGGGTGGAAAGTGGGAATTCTCCCTTGGCATCTGGAGCCGAGGGACTCAGGATGACTTCAAAAGCCTGTCCTGAGGCACGCTTGTCCAGTTCCTTAACCTGAAAGTCTCCAGAGGACGCCATTGCACTTCCAACCTCGATGGTTTCACACACCTTTAGATGAAGTGAAAATCAGAGCCGGAGTTGACCGCGCGCAGATTCCTCTCTGCCTCAGCATCAACCGTTCGCGCAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU106770 True 1744 lncRNA 0.38 5 199158 202946

Neighbor

gene id symbol gene type direction distance location
CI01000016_00166492_00172759 SERINC2L coding downstream 26399 166085 ~ 172759 (-)
CI01000016_00153934_00154312 NA coding downstream 43536 153908 ~ 155622 (-)
CI01000016_00099623_00100245 NA coding downstream 98913 98834 ~ 100245 (-)
CI01000016_00079894_00094596 HIVEP3 coding downstream 104562 78944 ~ 94596 (-)
CI01000016_00068703_00072323 NA coding downstream 126077 68658 ~ 73081 (-)
CI01000016_00251025_00251471 GBP coding upstream 47272 250218 ~ 251486 (-)
CI01000016_00448107_00452861 CCNE2 coding upstream 244912 447858 ~ 452861 (-)
CI01000016_00456765_00460615 TP53INP1 coding upstream 251882 454828 ~ 461209 (-)
CI01000016_00471859_00490955 NAGPA coding upstream 267837 470783 ~ 490955 (-)
CI01000016_00513504_00514565 NA coding upstream 309178 512124 ~ 514744 (-)
G93829 NA non-coding downstream 9820 188604 ~ 189338 (-)
G93801 NA non-coding downstream 48193 62817 ~ 150965 (-)
G93802 NA non-coding downstream 60284 132552 ~ 138874 (-)
G93805 NA non-coding downstream 139563 59358 ~ 59595 (-)
G93873 NA non-coding upstream 78048 280994 ~ 281211 (-)
G93934 NA non-coding upstream 197547 400493 ~ 401772 (-)
G93954 NA non-coding upstream 306125 509071 ~ 509303 (-)
G93988 NA non-coding upstream 371354 574300 ~ 576181 (-)
G93992 NA non-coding upstream 376271 579217 ~ 579783 (-)
G94786 NA other upstream 2067890 2270836 ~ 2276275 (-)
G95070 NA other upstream 2782314 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 3432661 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 3662815 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 4709762 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010084 stmn1b coding NC_007127.7 CM002900.2 34523515 ~ 34527206 (+)