Gene
RNA
| Item | Value |
|---|---|
| gene id | G93954 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 509071 ~ 509303 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU106917 | True | 233 | lncRNA | 0.33 | 1 | 509071 | 509303 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_00471859_00490955 | NAGPA | coding | downstream | 18116 | 470783 ~ 490955 (-) |
| CI01000016_00456765_00460615 | TP53INP1 | coding | downstream | 47862 | 454828 ~ 461209 (-) |
| CI01000016_00448107_00452861 | CCNE2 | coding | downstream | 56210 | 447858 ~ 452861 (-) |
| CI01000016_00251025_00251471 | GBP | coding | downstream | 257585 | 250218 ~ 251486 (-) |
| CI01000016_00166492_00172759 | SERINC2L | coding | downstream | 336312 | 166085 ~ 172759 (-) |
| CI01000016_00513504_00514565 | NA | coding | upstream | 2821 | 512124 ~ 514744 (-) |
| CI01000016_00581946_00586945 | NA | coding | upstream | 72563 | 581866 ~ 586997 (-) |
| CI01000016_00589778_00591095 | METTL6 | coding | upstream | 80369 | 589672 ~ 591294 (-) |
| CI01000016_00592794_00596916 | NA | coding | upstream | 82827 | 592130 ~ 597102 (-) |
| CI01000016_00601605_00607255 | RSPO3 | coding | upstream | 91319 | 600622 ~ 607255 (-) |
| G93934 | NA | non-coding | downstream | 107299 | 400493 ~ 401772 (-) |
| G93873 | NA | non-coding | downstream | 227860 | 280994 ~ 281211 (-) |
| G93835 | NA | non-coding | downstream | 306125 | 199158 ~ 202946 (-) |
| G93829 | NA | non-coding | downstream | 319733 | 188604 ~ 189338 (-) |
| G93801 | NA | non-coding | downstream | 358106 | 62817 ~ 150965 (-) |
| G93988 | NA | non-coding | upstream | 64997 | 574300 ~ 576181 (-) |
| G93992 | NA | non-coding | upstream | 69914 | 579217 ~ 579783 (-) |
| G94011 | NA | non-coding | upstream | 126864 | 636167 ~ 636370 (-) |
| G94017 | NA | non-coding | upstream | 135370 | 644673 ~ 644880 (-) |
| CI01000016_00679328_00729780 | NA | non-coding | upstream | 198747 | 678792 ~ 729966 (-) |
| G94786 | NA | other | upstream | 1761533 | 2270836 ~ 2276275 (-) |
| G95070 | NA | other | upstream | 2475957 | 2985260 ~ 2985641 (-) |
| CI01000016_03647744_03675574 | NA | other | upstream | 3126304 | 3647653 ~ 3675585 (-) |
| CI01000016_03921124_03930996 | NA | other | upstream | 3356458 | 3920055 ~ 3931162 (-) |
| CI01000016_04921091_04922518 | NA | other | upstream | 4403405 | 4918975 ~ 4922518 (-) |
