Gene
RNA
| Item | Value |
|---|---|
| gene id | G93343 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 706817 ~ 707300 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU106210 | False | 484 | lncRNA | 0.45 | 1 | 706817 | 707300 |
| TU106212 | True | 403 | lncRNA | 0.44 | 1 | 706898 | 707300 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_00569502_00581271 | NA | coding | upstream | 125318 | 569502 ~ 581499 (+) |
| CI01000016_00540871_00541608 | PLEKHF2.L, PLEKHF2 | coding | upstream | 165094 | 540632 ~ 541723 (+) |
| CI01000016_00496095_00506965 | NDUFAF6 | coding | upstream | 199784 | 496095 ~ 507033 (+) |
| CI01000016_00318676_00446341 | NA | coding | upstream | 260476 | 318676 ~ 446341 (+) |
| CI01000016_00294886_00298452 | NA | coding | upstream | 407656 | 294886 ~ 299161 (+) |
| CI01000016_00772375_00772848 | NA | coding | downstream | 64970 | 772270 ~ 772889 (+) |
| CI01000016_00885996_00887374 | NA | coding | downstream | 178696 | 885996 ~ 887478 (+) |
| CI01000016_00952494_00954683 | NA | coding | downstream | 245194 | 952494 ~ 954953 (+) |
| CI01000016_00959079_00960728 | NA | coding | downstream | 251353 | 958653 ~ 961060 (+) |
| CI01000016_00972599_01002933 | NA | coding | downstream | 264812 | 972112 ~ 1003172 (+) |
| G93342 | NA | non-coding | upstream | 1367 | 704868 ~ 705450 (+) |
| G93341 | NA | non-coding | upstream | 2384 | 704171 ~ 704433 (+) |
| G93332 | NA | non-coding | upstream | 8459 | 698101 ~ 698358 (+) |
| G93329 | NA | non-coding | upstream | 16303 | 690286 ~ 690514 (+) |
| G93328 | NA | non-coding | upstream | 17841 | 688665 ~ 688976 (+) |
| G93348 | NA | non-coding | downstream | 19229 | 726529 ~ 726729 (+) |
| G93349 | NA | non-coding | downstream | 22204 | 729504 ~ 729730 (+) |
| G93355 | NA | non-coding | downstream | 42043 | 749343 ~ 749558 (+) |
| G93357 | NA | non-coding | downstream | 45223 | 752523 ~ 752757 (+) |
| G93358 | NA | non-coding | downstream | 46301 | 753601 ~ 753839 (+) |
| G93406 | NA | other | downstream | 198100 | 905400 ~ 927532 (+) |
| G95439 | NA | other | downstream | 3154875 | 3862175 ~ 3862305 (+) |
| G95648 | NA | other | downstream | 3565336 | 4272636 ~ 4273905 (+) |
| CI01000016_04829592_04837305 | NA | other | downstream | 4127258 | 4829592 ~ 4837457 (+) |
| G95792 | NA | other | downstream | 4512580 | 5219880 ~ 5225941 (+) |
