G93442


Basic Information

Item Value
gene id G93442
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1195710 ~ 1198373 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU106322
AAAACATTTTATTCCAGAATGCATTTTTTTCTTTCCTCTAAATGTGACACAATGTATAATAAAATACAACTCCAAAAGTCCCAGAATCAGGGATTTTGAGTGTCAACGTTTTGCAAAACAAAACCTAAAACAAAGATTAAAAAGGGTAACTGCACAGCTCCTTCATAGAAGCCATTTATGTACATCCTGTTGGACATCTCTAACAGGACAGTTTCATTTCTATGAAACACTGAATAGCCTCTTTGAAATCAACCTCTATGTTCCATATTCCATCATGTTTTAATTTCCAATTGTTTTTTTGTTTCTCTTTTTGTCCATACGTTCATCACAGTCTTTAAAAAAACTGTCATTAATGATTGATGTTGTTATATATCATTACAGTACTTCCCTCTTCCTGCTATTGATGATCCTCCAGAGGCTCATAATGACTCATACGTTTAACAAAATTATTTAACAAATAAGCTGCATGAATTTCACTCTCACAAACACCTATTTACATCTATCACCATCTACACACAGAAATATATTTTTAAAAGAGCAGATTGGTCATTGCAAGGACCAGTCTGAGACACAATCTGACCAAAAGAAATGCCTGAATCCATATCAGACTAATCTTCCTCATCATCATCATCATCGTCATCACCAAAAGACAGCAGACTGTTGTTCTTCACCTTCACACCAGCTTTTGACTCTTTCTTCTCGCCATCCTCGCTTTTCTTCTTCTTGCTAGAGCTGGCCGTGATGCCTTTGAATTTATCAGAGGAGCGTTTGACAGGCTTCTTAAAGACGATCTTTCCATCTGCTGGAGGCTCTTCATCTGTGTTTGAATCCTTTGTATCTTTTTTGACTTTCATAACCTCTTCAGCACTCAGATCTCCCTTTTTTAAGACCACGACCTGCGGCATCTCGTCCTCGCGATCACTGTCACCATCACTGTCATCATCACACTGCGGCATCTGCTGCTTTTTAGTGTCCACCGTCGGCCCTTCTTTATAACCAACATCATTCTTAAATTTCTTCAAAAAAGATGGTTCGGCTGGCTTCACCCATGATACATTACCCTTTTTACTCATTGTTTTTCAGTTAAAATCAGCCTAATAAACGGTAAATGTGCTTTATGTTTTACAAACACTTAACACACAAGAACCAGGCGTGTAAATTTTGCGTCCATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106322 True 1173 lncRNA 0.38 3 1195710 1198373

Neighbor

gene id symbol gene type direction distance location
CI01000016_01183747_01191853 GPD1L coding upstream 2852 1183747 ~ 1192858 (+)
CI01000016_01122656_01129008 STT3B coding upstream 66702 1122656 ~ 1129008 (+)
CI01000016_01052539_01073915 NA coding upstream 120177 1052539 ~ 1075533 (+)
CI01000016_01033465_01037665 NA coding upstream 157264 1033465 ~ 1038446 (+)
CI01000016_00972599_01002933 NA coding upstream 192538 972112 ~ 1003172 (+)
CI01000016_01217119_01220858 EBAG9 coding downstream 18746 1217119 ~ 1221937 (+)
CI01000016_01238151_01242924 GDF6, GDF6A coding downstream 39618 1237991 ~ 1242960 (+)
CI01000016_01253760_01273553 NA coding downstream 55033 1253406 ~ 1273953 (+)
CI01000016_01277792_01304615 NA coding downstream 78555 1276928 ~ 1304762 (+)
CI01000016_01408124_01408966 TMEM74 coding downstream 208263 1406636 ~ 1409165 (+)
G93434 NA non-coding upstream 110943 1084467 ~ 1084767 (+)
G93413 NA non-coding upstream 115775 1078828 ~ 1079935 (+)
G93414 NA non-coding upstream 155285 962579 ~ 1040425 (+)
G93409 NA non-coding upstream 262909 927840 ~ 932801 (+)
G93410 NA non-coding upstream 326773 862104 ~ 868937 (+)
G93476 NA non-coding downstream 13971 1212344 ~ 1212621 (+)
G93449 NA non-coding downstream 29825 1228198 ~ 1235846 (+)
G93497 NA non-coding downstream 63547 1261920 ~ 1262207 (+)
G93483 NA non-coding downstream 142079 1340452 ~ 1342798 (+)
G93547 NA non-coding downstream 196325 1394698 ~ 1449594 (+)
G93406 NA other upstream 268178 905400 ~ 927532 (+)
G95439 NA other downstream 2663802 3862175 ~ 3862305 (+)
G95648 NA other downstream 3074263 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 3636185 4829592 ~ 4837457 (+)
G95792 NA other downstream 4021507 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 4207496 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010139 zgc:77056 coding NC_007127.7 CM002900.2 39242339 ~ 39246079 (+)