G94364


Basic Information

Item Value
gene id G94364
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1563089 ~ 1563911 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU107354
TTCTCCAGCGGTGAGACTGCTGCGTCTGACAGTGGCTGTAGTCCACACAGTTCAACACGATCAGCGCAAATGAGAACAGGCGAAACTGCATCTGGGCGGCTGTATGATTGTCCCGACTCACGGTAGAAAGCGTCAAAGGTACTCGCCGCGAGCCTTCAAGGTCCGTATAAGAGGTTTCAATATGTATATTTTTCCACAGAGGAGCAGGGAGTTGAGGAGTCCGGACTCGGTTGTGTCACACATTAGATGGGTAGAGAAAACACCATTTCTCACCACCGGTTAATGTCATTTTAAAGAGCGAAACGTGCTTTTTTTTAACAATAAAAAGTGTCTCGTTAATGTCTGTGGAGAAAGAAAAGCTTTTAACTTGAGCTTCTTTGAGTAACAATTACACCTTGATGGATCAATGTGTTTGCGAGTGAACTATTTCATTCAAAAGAACTTAAGGAATTAGCGAATCTCCAAAAGCGCACGAGACGCGGGATGCCTTCAAAAGTAGATGCACAGAGCGAAAGAAATATACCTGCGCGAGTCCAGTCCAAAAAAAAAGAAGAGAAACTTAGCCTATACATCAAGTTCCTTCCGACTGCCAAAGTGGACTTGGAACATCCAGCATCCCTCTCGCAGGAAAAGTTTAGTCCTTTCGTCCCCTAGACAGAGTGAGAAAACACATGGATGCAATAGTCTGCAAAAGCTCTAGAATAAACCCTTGAGGTGCATGAGGATGTGTGTGTAACTGTGGCATATGCTGCAGTGCTCGGCTGGTGATGGAGTATCACTCTACTGGTGCTGATGCTATATAGGCGCTGCTGTCACGTGGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU107354 True 823 lncRNA 0.45 1 1563089 1563911

Neighbor

gene id symbol gene type direction distance location
CI01000016_01476991_01494147 NA coding downstream 68095 1476837 ~ 1494994 (-)
CI01000016_01396291_01399075 TRHRA coding downstream 162135 1394715 ~ 1400954 (-)
CI01000016_01341525_01342959 ENY2, ENY2.L coding downstream 219531 1341347 ~ 1343558 (-)
CI01000016_01224759_01234682 NA coding downstream 328407 1224136 ~ 1234682 (-)
CI01000016_01202843_01213613 ZDHHC3B, ZDHHC3, ZDHHC3A, MGC82349 coding downstream 349476 1201258 ~ 1213613 (-)
CI01000016_01577710_01581289 NA coding upstream 12495 1576406 ~ 1581679 (-)
CI01000016_01653014_01654553 NA coding upstream 88476 1652387 ~ 1654559 (-)
CI01000016_01659416_01671969 NA coding upstream 95063 1658974 ~ 1671969 (-)
CI01000016_01689633_01693021 NA coding upstream 125584 1689495 ~ 1693672 (-)
CI01000016_01835869_01947822 TSNARE1 coding upstream 271834 1835745 ~ 1947842 (-)
G94394 NA non-coding downstream 110687 1452175 ~ 1452402 (-)
G94351 NA non-coding downstream 227425 1335082 ~ 1335664 (-)
G94316 NA non-coding downstream 299340 1263507 ~ 1263749 (-)
G94310 NA non-coding downstream 317492 1245346 ~ 1245597 (-)
G94256 NA non-coding downstream 431147 1125042 ~ 1131942 (-)
G94433 NA non-coding upstream 1409 1565320 ~ 1565651 (-)
G94434 NA non-coding upstream 4144 1568055 ~ 1568282 (-)
G94449 NA non-coding upstream 59121 1623032 ~ 1624002 (-)
G94510 NA non-coding upstream 169168 1733079 ~ 1737573 (-)
G94786 NA other upstream 706925 2270836 ~ 2276275 (-)
G95070 NA other upstream 1421349 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 2071696 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 2301850 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 3348797 4918975 ~ 4922518 (-)

Expression


Co-expression Network