G94449


Basic Information

Item Value
gene id G94449
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1623032 ~ 1624002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU107450
TAAATGCTATGTGGAGGCTATGTTTTTTATTTAGCTTTTTTGTTCTTTTTAAATTCATTTAACTGTAGCTGGTATTATAACCCTTTACACATTTAAAAGCTGAAGGTGTCAATACTGAAAATACAGTAAGGTTTTTTTATATTTATCATCAATGTTACCATTATTAGATAAACTCACCGACTATGTACACATGAGTTTGTGGCCATGCTAGTTGAACAACTAAGATTCTTACCCACAATATACAGTTAAAGCATAAAGCGGTCTGGACGTAAACATCTTGTGCTGAGAATAATAATTTCGCAACTATGCATGGTTTGCAACATTGCTATGAAAAACAAAGTACCTATTTGACAAGAAAGGCCATACATGATGCACTCTGCCTTGATTTTTAAGGAAGGGGAATGGTGTAAATTGTACATAAATACAGATAAGTCTCTCTCTTGTTTTTCAGGGCATCATAATCAGTCAATCATCACGTAACCTTTCCGATCTCTTCTGCTCCTTTCGCCACTCTGTGCTCGTTCAACTCCTCCAGGTCTCCATGCCCAAGCTTTCTGTGCTTCCAGCTCAGTCTCTCTCTTCTTCCTCCTCAAACAGGACGAGATATGAGCTATATGAACAGCTGCTGTAGTGTTCCATGATATCACAGTGGGGTCATGGGTCGGGGGGACGTGTCACCGGTGAGGGAAGCAGCAGGAGGCACAGAGACACAGTGTGACCACATGACCCGAACAGAGGCGAGGTGGTCGCTGTGTTGGTTCTGGGCCCGGAACCGCAGCCTCTGCTTGTTGGACTTCTTCTTTTGGTCTTTGGTCCGGGGGCCCTTCCCCG

Function

NR:

description
LOW QUALITY PROTEIN: toll-like receptor 4

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU107450 True 831 lncRNA 0.43 2 1623032 1624002

Neighbor

gene id symbol gene type direction distance location
CI01000016_01577710_01581289 NA coding downstream 41353 1576406 ~ 1581679 (-)
CI01000016_01476991_01494147 NA coding downstream 128038 1476837 ~ 1494994 (-)
CI01000016_01396291_01399075 TRHRA coding downstream 222078 1394715 ~ 1400954 (-)
CI01000016_01341525_01342959 ENY2, ENY2.L coding downstream 279474 1341347 ~ 1343558 (-)
CI01000016_01224759_01234682 NA coding downstream 388350 1224136 ~ 1234682 (-)
CI01000016_01653014_01654553 NA coding upstream 28385 1652387 ~ 1654559 (-)
CI01000016_01659416_01671969 NA coding upstream 34972 1658974 ~ 1671969 (-)
CI01000016_01689633_01693021 NA coding upstream 65493 1689495 ~ 1693672 (-)
CI01000016_01835869_01947822 TSNARE1 coding upstream 211743 1835745 ~ 1947842 (-)
CI01000016_02120276_02136906 NA coding upstream 496154 2120156 ~ 2137185 (-)
G94434 NA non-coding downstream 54750 1568055 ~ 1568282 (-)
G94433 NA non-coding downstream 57381 1565320 ~ 1565651 (-)
G94364 NA non-coding downstream 59121 1563089 ~ 1563911 (-)
G94394 NA non-coding downstream 170630 1452175 ~ 1452402 (-)
G94351 NA non-coding downstream 287368 1335082 ~ 1335664 (-)
G94510 NA non-coding upstream 109077 1733079 ~ 1737573 (-)
G94634 NA non-coding upstream 448462 2072464 ~ 2078409 (-)
G94674 NA non-coding upstream 526361 2150363 ~ 2150589 (-)
G94748 NA non-coding upstream 556252 2180254 ~ 2180460 (-)
G94786 NA other upstream 646834 2270836 ~ 2276275 (-)
G95070 NA other upstream 1361258 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 2011605 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 2241759 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 3288706 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location