Gene
RNA
| Item | Value |
|---|---|
| gene id | G95044 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 2720126 ~ 2726237 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU108149 | True | 5057 | lncRNA | 0.39 | 3 | 2720126 | 2726237 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_02679833_02695963 | SH3BP5B, SH3BP5 | coding | downstream | 24163 | 2678538 ~ 2695963 (-) |
| CI01000016_02589744_02622875 | NA | coding | downstream | 97251 | 2589475 ~ 2622875 (-) |
| CI01000016_02568824_02575674 | DECR1 | coding | downstream | 144452 | 2568610 ~ 2575674 (-) |
| CI01000016_02467451_02477544 | NA | coding | downstream | 242582 | 2467451 ~ 2477544 (-) |
| CI01000016_02328065_02334778 | NA | coding | downstream | 384390 | 2327812 ~ 2335736 (-) |
| CI01000016_02802780_02815803 | NA | coding | upstream | 76362 | 2802599 ~ 2815803 (-) |
| CI01000016_02817855_02829699 | NA | coding | upstream | 91618 | 2817855 ~ 2830457 (-) |
| CI01000016_02884294_02912568 | MAP7D1A | coding | upstream | 156609 | 2882846 ~ 2912568 (-) |
| CI01000016_02936606_02957342 | NA | coding | upstream | 209872 | 2936109 ~ 2957875 (-) |
| CI01000016_02991852_02994428 | CITED2, CITED4B | coding | upstream | 264983 | 2991220 ~ 2994428 (-) |
| G95132 | NA | non-coding | downstream | 13075 | 2705470 ~ 2707051 (-) |
| G95121 | NA | non-coding | downstream | 69018 | 2650907 ~ 2651108 (-) |
| G95061 | NA | non-coding | downstream | 138406 | 2581258 ~ 2581720 (-) |
| G95103 | NA | non-coding | downstream | 177908 | 2541973 ~ 2542218 (-) |
| G95102 | NA | non-coding | downstream | 178324 | 2541583 ~ 2541802 (-) |
| G95136 | NA | non-coding | upstream | 7511 | 2733748 ~ 2734245 (-) |
| G95138 | NA | non-coding | upstream | 30634 | 2756871 ~ 2757185 (-) |
| G95139 | NA | non-coding | upstream | 32290 | 2758527 ~ 2758740 (-) |
| G95140 | NA | non-coding | upstream | 32882 | 2759119 ~ 2759334 (-) |
| G95142 | NA | non-coding | upstream | 36411 | 2762648 ~ 2762865 (-) |
| G94786 | NA | other | downstream | 443851 | 2270836 ~ 2276275 (-) |
| G95070 | NA | other | upstream | 259023 | 2985260 ~ 2985641 (-) |
| CI01000016_03647744_03675574 | NA | other | upstream | 909370 | 3647653 ~ 3675585 (-) |
| CI01000016_03921124_03930996 | NA | other | upstream | 1139524 | 3920055 ~ 3931162 (-) |
| CI01000016_04921091_04922518 | NA | other | upstream | 2186471 | 4918975 ~ 4922518 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | upstream | 2599282 | 5325519 ~ 5332874 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| mexican tetra (Astyanax mexicanus) | G92321 | NA | non-coding | NC_035906.1 | CM008309.1 | 20822659 ~ 20825484 (-) |
