Gene
RNA
| Item | Value |
|---|---|
| gene id | G95172 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 2877531 ~ 2877739 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU108284 | True | 209 | lncRNA | 0.44 | 1 | 2877531 | 2877739 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_02817855_02829699 | NA | coding | downstream | 47074 | 2817855 ~ 2830457 (-) |
| CI01000016_02802780_02815803 | NA | coding | downstream | 61728 | 2802599 ~ 2815803 (-) |
| CI01000016_02679833_02695963 | SH3BP5B, SH3BP5 | coding | downstream | 181568 | 2678538 ~ 2695963 (-) |
| CI01000016_02589744_02622875 | NA | coding | downstream | 254656 | 2589475 ~ 2622875 (-) |
| CI01000016_02568824_02575674 | DECR1 | coding | downstream | 301857 | 2568610 ~ 2575674 (-) |
| CI01000016_02884294_02912568 | MAP7D1A | coding | upstream | 5107 | 2882846 ~ 2912568 (-) |
| CI01000016_02936606_02957342 | NA | coding | upstream | 58370 | 2936109 ~ 2957875 (-) |
| CI01000016_02991852_02994428 | CITED2, CITED4B | coding | upstream | 113481 | 2991220 ~ 2994428 (-) |
| CI01000016_03060171_03060612 | RAB42B | coding | upstream | 181804 | 3059543 ~ 3060612 (-) |
| CI01000016_03062846_03063013 | NA | coding | upstream | 185107 | 3062846 ~ 3063272 (-) |
| G95166 | NA | non-coding | downstream | 12400 | 2864769 ~ 2865131 (-) |
| G95161 | NA | non-coding | downstream | 28628 | 2848679 ~ 2848903 (-) |
| G95158 | NA | non-coding | downstream | 37837 | 2839470 ~ 2839694 (-) |
| G95157 | NA | non-coding | downstream | 39011 | 2838255 ~ 2838520 (-) |
| G95154 | NA | non-coding | downstream | 101665 | 2775445 ~ 2775866 (-) |
| G95181 | NA | non-coding | upstream | 141055 | 3018794 ~ 3019070 (-) |
| G95199 | NA | non-coding | upstream | 165928 | 3043667 ~ 3043866 (-) |
| G95191 | NA | non-coding | upstream | 172152 | 3049891 ~ 3050726 (-) |
| G95203 | NA | non-coding | upstream | 213626 | 3091365 ~ 3091751 (-) |
| G95210 | NA | non-coding | upstream | 228021 | 3105760 ~ 3106448 (-) |
| G94786 | NA | other | downstream | 601256 | 2270836 ~ 2276275 (-) |
| G95070 | NA | other | upstream | 107521 | 2985260 ~ 2985641 (-) |
| CI01000016_03647744_03675574 | NA | other | upstream | 757868 | 3647653 ~ 3675585 (-) |
| CI01000016_03921124_03930996 | NA | other | upstream | 988022 | 3920055 ~ 3931162 (-) |
| CI01000016_04921091_04922518 | NA | other | upstream | 2034969 | 4918975 ~ 4922518 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | upstream | 2447780 | 5325519 ~ 5332874 (-) |
