G96687


Basic Information

Item Value
gene id G96687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3862069 ~ 3887758 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109997
AGGCGACCCAGGGGAAGCGCAGATCATGAGTGTCCACAAACACATTCTGGACGAACAGATTGGGGCTGCAGCTATGCTGTGGGACAAAGACAGCAGAAGACAGGATGTAAACACAGTAGCTGCGAACCGTAAAGAATCCTTACATGATTCCAATGAATAGTGTTAATGTCAAATATAAGTCACCCATATCAGGTCTCATACTCACATTGAGGTAGCGTCCAAGGTTGCCTTCCAGTTTGGCATCAATGATATAACAGGATTCCTCCCCGTCGAAGAACTGGCGGGTGTTTTTAGGGCCACCTTCGCCCCCGCCACCTCCGTGTCCATGAGATGGGCCCGACCCACCTCCTCCTCCACCCCCTCCCCCCGTTTTCACCATCAGTCCATGGGACTTCAAAGCAATGCCACGTGTGGACTTCACCGCCACCTGCCTCTTCACCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109997 True 442 lncRNA 0.52 2 3862069 3887758

Neighbor

gene id symbol gene type direction distance location
CI01000016_03834829_03843163 ZNF687 coding downstream 18803 3834500 ~ 3843266 (-)
CI01000016_03719404_03722988 NA coding downstream 139011 3719167 ~ 3723058 (-)
CI01000016_03647744_03675574 NA coding downstream 186484 3647653 ~ 3675585 (-)
CI01000016_03555967_03558776 C1H1ORF43, CUNH1ORF43 coding downstream 302883 3555300 ~ 3559186 (-)
CI01000016_03322103_03326683 NA coding downstream 531307 3322003 ~ 3330762 (-)
CI01000016_03921124_03930996 NA coding upstream 32297 3920055 ~ 3931162 (-)
CI01000016_04044171_04047247 TRIM108 coding upstream 156257 4044015 ~ 4047305 (-)
CI01000016_04084854_04101874 PIANP coding upstream 196966 4084724 ~ 4101953 (-)
CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding upstream 293505 4181263 ~ 4188590 (-)
CI01000016_04226585_04232287 NA coding upstream 338681 4226439 ~ 4232287 (-)
G96629 NA non-coding downstream 29507 3831525 ~ 3832562 (-)
G96675 NA non-coding downstream 41441 3819667 ~ 3820628 (-)
G96672 NA non-coding downstream 50570 3809510 ~ 3811499 (-)
G96626 NA non-coding downstream 61101 3734525 ~ 3800968 (-)
G96695 NA non-coding upstream 8277 3896035 ~ 3952982 (-)
G96719 NA non-coding upstream 79584 3967342 ~ 3967897 (-)
G96728 NA non-coding upstream 81753 3969511 ~ 3971844 (-)
G96729 NA non-coding upstream 86049 3973807 ~ 3974048 (-)
G95070 NA other downstream 876428 2985260 ~ 2985641 (-)
G94786 NA other downstream 1585794 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 1024950 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1437761 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1524501 5412248 ~ 5415906 (-)
G97341 NA other upstream 2271228 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 5001075 8888833 ~ 8894737 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G112536 setdb1b,LOC107723461,LOC107582057,LOC107671207,LOC107573682,LOC107717459 non-coding NC_056714.1 CM032083.1 14544856 ~ 14549398 (+)