G95439


Basic Information

Item Value
gene id G95439
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3862175 ~ 3862305 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108565
GCCCATCTCATGGACACGGAGGTGGCGGGGGCGAAGGTGGCCCTAAAAACACCCGCCAGTTCTTCGACGGGGAGGAATCCTGTTATATCATTGATGCCAAACTGGAAGGCAACCTTGGACGCTACCTCAATCATAGCTGCAGCCCCAATCTGTTCGTCCAGAATGTGTTTGTGGACACTCATGATCTGCGCTTTCCCTGGGTTGCCTTCTTTGCTAGCAAGCGAATCCGAGCAGGGACGGAGTTGACATGGGATTATAATTATGAAGTTGGCAGTGTAGAGGGCAAGGAGCTTCTGTGCTGCTGTGGATCAACAGAATGCAGAGGACGACTGCTGTAACATATGCACGCACACACACAAACACACACACACGCACTAAAGGTACCTCCTATTGCAGACGTGCCAGTGAACACTTACTTGGAGCTCCTGGAAGTTGGATTTGTCCGGTAAGGTCTGTGCTACTGATGAGAACTGAGCAGACACTGAATGAAGAGGAATTTGTTCAGAAACTTACTGAAGTAATAAAAAAACATTGTATGTTCGCGTGTTTTCAACTTTCCTGCTTCACAAAGTTCCGGCTTAAACCCCAAATGGACCCATGGCATCTATCACTATGGTTTACTCAATCCTTACTGGAAACAGACGTTTCTTTTTTTACATACATATGTCAGTCTCAAGACTCTAATGTTTTGTTTTAGTCAATCTTTTGTTCCTCTTTTATACATGTAGTTTTGATTATGAAGATCCAAGGTTTCTTTTTTCATTTTACTCATGGTTTTGTGATTGTCATTGTATGCTGCTGTGTAAATGTGCTTTTGTTGGTCAACAGGTTTATAAAAACAGACAAAATTGTACTTTTTTGCAATTTGAATTAAAGTTCTCGAAAGACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU108565 True 131 TUCP 0.43 1 3862175 3862305

Neighbor

gene id symbol gene type direction distance location
CI01000016_03845787_03847359 NA coding upstream 13727 3845787 ~ 3848448 (+)
CI01000016_03809704_03831736 NA coding upstream 29775 3809704 ~ 3832400 (+)
CI01000016_03798165_03803686 NA coding upstream 58387 3798037 ~ 3804627 (+)
CI01000016_03780734_03792228 NA coding upstream 69759 3780447 ~ 3792416 (+)
CI01000016_03767260_03771612 NA coding upstream 90347 3766998 ~ 3771828 (+)
CI01000016_03889898_03894185 NA coding downstream 24976 3888833 ~ 3894730 (+)
CI01000016_03895417_03896392 NA coding downstream 31470 3895327 ~ 3896450 (+)
CI01000016_03912450_03917198 NA coding downstream 48005 3911862 ~ 3917219 (+)
CI01000016_03942653_03949757 NA coding downstream 78626 3942483 ~ 3949920 (+)
CI01000016_03951956_03957698 NA coding downstream 87553 3951410 ~ 3957882 (+)
G95533 NA non-coding upstream 134678 3669705 ~ 3727497 (+)
G95494 NA non-coding upstream 228177 3633635 ~ 3633998 (+)
G95524 NA non-coding upstream 331238 3530583 ~ 3530937 (+)
CI01000016_03965750_03967383 NA non-coding downstream 70380 3965498 ~ 3967397 (+)
G95500 NA non-coding downstream 122915 3986772 ~ 3989111 (+)
G95621 NA non-coding downstream 129180 3993037 ~ 3993261 (+)
G95622 NA non-coding downstream 129417 3993274 ~ 3993474 (+)
G95623 NA non-coding downstream 129949 3993806 ~ 3994081 (+)
G93406 NA other upstream 2934643 905400 ~ 927532 (+)
G95648 NA other downstream 408779 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 970701 4829592 ~ 4837457 (+)
G95792 NA other downstream 1356023 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 1542012 5405791 ~ 5407963 (+)
G96389 NA other downstream 3296784 7160641 ~ 7161290 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location