G96728


Basic Information

Item Value
gene id G96728
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3969511 ~ 3971844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU110051
TCGAATGACAAAAATGTCTTTATTTTAGCTAAAAAATTATACTTATAACTATCACAGTCTTACAGTACATAGGCTACAAACAAGAAAACCCAGAACTCACCACAATATAGCAAGAATATGCCAACAATACATGGCCAAAAACTGATCAAACATCAGGGGAAAACACTAAACAGTTTGGAAACATAGCGACACCTAGTGGTCACTTTCAAAAAGTCTTGAGTGTCTTATAATTGCAATGTTTAAAGTCTAATGTACAGAAAATAATGATCTCTCCCTCTCCAAGTATCAAGGAAATGCACTCAAAATTGAAATAAGTGGTAAACAGTTAATATTATTTTGATCCACTTCAAATGTTGACTACTATATATTTAAGAGTTATATATATGTGTGAAAAAACACAACTCTTGGTGTCCAATTCTGTGATTTCCAAAGAAAACATGTTTGTTATATAAACTCTCCTGGTCATTTTCTCCGATTAGAAGTGTCTCTGCACACTGATAAACACAGTATCTACTCACATTACTCTCTTTGACATATTTTCTGCTGGAGTCCCAGATTGTCACATATATCAGCACCTAAACATCAATAGACACATAGTGAACCAAGATACGATCTGTGAGAGTATAGTATAAAGGTAATGAAATACCAAATTAATGTTTTAATAAAGAAAGGATTTTGTGTAGTGTTACGTTGGAAGATGTAAGTTTTGTGTATTAGTGTTCTTTTCTCTCCTTGTCTTGACGGGAGGAGCATCATTTAAAAAAAACAGAAGGTGGATGCTGTGGATTGTAGCAGTTGGAAACGCGATTTACGGTGATTTAGTTATTCTTGAGTGTTAGATTGTGTATCAGTGAGAGCAGTGAGTGATAGTGTGGATGTATTGTGATTTTCTTTCTCTATTCATCTTTGTATTGTTTTTTATTACTATTCATTGTTTTTGGCTACTGTGACATGTAAATACTTGTTGTGTATATGCCTGTTACTTTCACAGAAGCTGTAGGGGTTGGGTGCCATTTCTTTCTTTCTTCCTTATTTTCATCACCATTTTTACCTCTTGTTTATTACTAGTTAAAAAGGCCATGAAGCTCTCCATATTTTTGTTACATTTCTTTCTCTTTTTTTCTTTCTTTTTTTTGTTGTTAGGAAAGTTTTATCGTCAGTGGTGTTTGATTATTTATGATGAACCATGCTAAACACAGCACATCTACTGTTGATCTATAACTGATCATCTTTGTTGTTTAATCTATTACACCAAAATATCTTAAACTGCTCAGTTGAGTTCATTTTGTTCCTGTTGACAGAGTCTGCATTTTAATGCAGCTATATTTATATTACATTTCTATGATATAACCTGAAAAGGAGTTTAAGTATTTGTTATAAAATATAAAGAGTTATGAAAAGAAAAGAGTTATGAGAAACAGAGAGAAATCAGTTCTATTTAGAGACTGCTTTTACAAGAAAACTGTGATCTACAGTTTTTTTCTACAGATTTTCATGCACATTCAGGAATAAAAGATTATTTACAAATGTCACACTGACTTTGAGATCATGACATCAGTGTCAGGAAGAATAAACTAAGCATGTTCAAACTTGCAGACTTCATTCCAGTTTAGCTCAATTTAAACATTTTTTATATGTATGTAAATATATATTTAAATAGAATTTTTTTCGCAGATGTCTTATAAAGCGTGTAGAAATGTGTTTACCGGTGAGAAATGAGCAGACGATTATCAGTCCCAGAAGAAACAAATGACACTTTTCAGCCATTTTCTTCCTATTCGTTAAACATTATCAGCTCCTCCTCTGTCTGTAGCTTCCTGTGATCACAGAATGTCTTTGGAACAGACTGCCTTGAGCCCCTGCCCCGTGAAAGTGAAAGTGCTCACGCGGTCCCAATTTTCCTGTCCCCCGGAACGTGATTTCGCCCTCGCGGAGGTCTGTGAATCCTCACCAACTGTTTGTCTGATCCATGTTAAGAACAAATAACAGGGTTTACTCATTTAGCTCGGTTTCCAAAATAAATACGCATGTTTTGTTTTATTTCACTAATCGTTATCTGAGCAAATTATCAGAATAATATTAATATTATGCTTTTCATTTTTTTTTTAATATATATATTTGTAATATGGGATATAAATGTCAATTTGGGATATAAATAGGACACCTATTGTCATATGAATAAGTATTTTCTGCATTTGGATTTATGATCTAATTTTTAGGATTTTAAGAACATGCTAAGGAGTGTTAATCAACATAACCTAAACAGTTTATGTTTTCTCATTTTCTCCTTAAATAAAACAAATCCTGCTGCTGACAATGCAGACTCATATGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110051 True 2334 lncRNA 0.33 1 3969511 3971844

Neighbor

gene id symbol gene type direction distance location
CI01000016_03921124_03930996 NA coding downstream 38349 3920055 ~ 3931162 (-)
CI01000016_03881771_03883341 NA coding downstream 86045 3880493 ~ 3883466 (-)
CI01000016_03834829_03843163 ZNF687 coding downstream 126245 3834500 ~ 3843266 (-)
CI01000016_03719404_03722988 NA coding downstream 246453 3719167 ~ 3723058 (-)
CI01000016_03647744_03675574 NA coding downstream 293926 3647653 ~ 3675585 (-)
CI01000016_04044171_04047247 TRIM108 coding upstream 72171 4044015 ~ 4047305 (-)
CI01000016_04084854_04101874 PIANP coding upstream 112880 4084724 ~ 4101953 (-)
CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding upstream 209419 4181263 ~ 4188590 (-)
CI01000016_04226585_04232287 NA coding upstream 254595 4226439 ~ 4232287 (-)
CI01000016_04264738_04270463 ABHD16A coding upstream 292085 4263929 ~ 4272171 (-)
G96719 NA non-coding downstream 1614 3967342 ~ 3967897 (-)
G96695 NA non-coding downstream 16529 3896035 ~ 3952982 (-)
G96686 NA non-coding downstream 66753 3863165 ~ 3902758 (-)
G96687 NA non-coding downstream 81753 3862069 ~ 3887758 (-)
G96729 NA non-coding upstream 1963 3973807 ~ 3974048 (-)
G96723 NA non-coding upstream 8860 3980704 ~ 3984004 (-)
G96724 NA non-coding upstream 14958 3986802 ~ 3988814 (-)
G96736 NA non-coding upstream 20767 3992611 ~ 3992823 (-)
G96742 NA non-coding upstream 31501 4003345 ~ 4065351 (-)
G95070 NA other downstream 983870 2985260 ~ 2985641 (-)
G94786 NA other downstream 1693236 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 940864 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1353675 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1440415 5412248 ~ 5415906 (-)
G97341 NA other upstream 2187142 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4916989 8888833 ~ 8894737 (-)

Expression


Co-expression Network