G96723


Basic Information

Item Value
gene id G96723
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3980704 ~ 3984004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU110045
TATTCTGAGGATCTGTTTTGTGGAATGAGATATGCATTGGAAATATCAATGCAGAGTTCAATCACATCACAATCAGAAGCCTCAATCAAGAATTCTTCTCAGCGCTTTATCAACTTGCAGCTTGATTTCTGGAAATTTGTGCAGTTGAAAGTGGCAGTTGAAAAGAGAGTTTATTGCGCAAATTAAATCTATGCACTGACATCACTGCTAAGTGCACAGTTCTTCATGGCCTTCCTCTCATTCTTGGAGAAGAAACCTCTGATTTTTTTAAACATTGCTGACAGGACTGTGATTGTGACACACCCTTCTTCAGGATTCTGACCGTGATAACAGAAGACAGCCAGGATTCTTCCTCCACAAGAACTACATTTGGAGTCTTCATGCACAGCATTATTCTAGACTGAGCCATTATCATGGATGAACTTGAAAACCTTCCAGGTGCCATGTGACTAATTTCTGGACTGATATGTGCCAAATTTGGAGTTTTTCTTTCCCTTGGACACAATTCTCTGAAACCAAAACTACATTTACTTAAAACCCTTCTGTTGATGTAAGCAAAGGCTGTTTGAGATCGTTAAAGGCTTAGTTCACCCAAAAATGTAAATTCTGTCATCAGTTTTTCACTCTCATGTTGTTTGACTTTGGTTAGTCTTTCACTCACAAACTTAGATATTTTTAAAGAAAACAGGCTGGAAAACTTTTTGGATCTTTTAAGTTTTGGTTACCTGGACTTTCAGTTGGAGGGACAGAAACCTCTCAGATTTCATTAAAAATAATTTCATTTATGTTTCAAAGTCTAACCAAAGTCTTATGAGTTTGTGACATCATGAGGGTGAGTAAATGATGAGAGAATTTCTTTTTTTTTTTTGCGAACTATCGCTTTAATCTTGCTGTTGCACTAAAGCCAACATTCTTTTTAATTAAAGTGTTAAATTGTCACCTGCCAAAGTTTAAACTGTCAAAATTAAGCTAACATTGATTTTTGTTTCATGGTCTGCTATTCAGTTTCTTGTCAAAAGACTGTTAGTATTATTGGTTTATTCATCAGTCATGATTTGTAATGCATATTGTTACATTAATGAAAAATGTTTAGAATTAGGGGTGCCAGAATGGCATTGTTTGGTACATTGTAGTATCTGA
>TU110046
GTGACACTGGGTGTGATGTTATATTATTGAAATTGTTGAGTTGTGTTTGATTGTGCTAATCGAAATTAGCAGTTAGCATTTGCAAGTTACTGGTCTTTGGCTGCATGTTTTGAATAAAGGAACTTTTTTCATGTTTTAGATATTTTTATTATGTGTACAATGTAGACTGGGGAAAACTTTACTAATTACTCTACTGATTTCAATTTGGATGCTAGTTTAGGTGTGTTGTACAGGGATGTTATAATTAGTTTTTTTTTTGTTTTTTTAGATTTCTTAAGATTAAAATGTTTGAAGACTACACAATGGATCTGTTTTGTGGAATGAGATATGCATTGGAAATATCAATGCAGAGTTCAATCACATCACAATCAGAAGCCTCAATCAAGAATTCTTCTCAGCGCTTTATCAACTTGCAGCTTGATTTCTGGAAATTTGTGCAGTTGAAAGTGGCAGTTGAAAAGAGAGTTTATTGCGCAAATTAAATCTATGCACTGACATCACTGCTAAGTGCACAGTTCTTCATGGCCTTCCTCTCATTCTTGGAGAAGAAACCTCTGATTTTTTTAAACATTGCTGACAGGACTGTGATTGTGACACACCCTTCTTCAGGATTCTGACCGTGATAACAGAAGACAGCCAGGATTCTTCCTCCACAAGAACTACATTTGGAGTCTTCATGCACAGCATTATTCTAGACTGAGCCATTATCATGGATGAACTTGAAAACCTTCCAGGTGCCATGTGACTAATTTCTGGACTGATATGTGCCAAATTTGGAGTTTTTCTTTCCCTTGGACACAATTCTCTGAAACCAAAACTACATTTACTTAAAACCCTTCTGTTGATGTAAGCAAAGGCTGTTTGAGATCGTTAAAGGCTTAGTTCACCCAAAAATGTAAATTCTGTCATCAGTTTTTCACTCTCATGTTGTTTGACTTTGGTTAGTCTTTCACTCACAAACTTAGATATTTTTAAAGAAAACAGGCTGGAAAACTTTTTGGATCTTTTAAGTTTTGGTTACCTGGACTTTCAGTTGGAGGGACAGAAACCTCTCAGATTTCATTAAAAATAATTTCATTTATGTTTCAAAGTCTAACCAAAGTCTTATGAGTTTGTGACATCATGAGGGTGAGTAAATGATGAGAGAATTTCTTTTTTTTTTTTGCGAACTATCGCTTTAATCTTGCTGTTGCACTAAAGCCAACATTCTTTTTAATTAAAGTGTTAAATTGTCACCTGCCAAAGTTTAAACTGTCAAAATTAAGCTAACATTGATTTTTGTTTCATGGTCTGCTATTCAGTTTCTTGTCAAAAGACTGTTAGTATTATTGGTTTATTCATCAGTCATGATTTGTAATGCATATTGTTACATTAATGAAAAATGTTTAGAATTAGGGGTGCCAGAATGGCATTGTTTGGTACATTGTAGTATCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU110045 False 1140 lncRNA 0.36 6 3980704 3984004
TU110046 True 1436 lncRNA 0.34 6 3980704 3983883

Neighbor

gene id symbol gene type direction distance location
CI01000016_03921124_03930996 NA coding downstream 49542 3920055 ~ 3931162 (-)
CI01000016_03881771_03883341 NA coding downstream 97238 3880493 ~ 3883466 (-)
CI01000016_03834829_03843163 ZNF687 coding downstream 137438 3834500 ~ 3843266 (-)
CI01000016_03719404_03722988 NA coding downstream 257646 3719167 ~ 3723058 (-)
CI01000016_03647744_03675574 NA coding downstream 305119 3647653 ~ 3675585 (-)
CI01000016_04044171_04047247 TRIM108 coding upstream 60011 4044015 ~ 4047305 (-)
CI01000016_04084854_04101874 PIANP coding upstream 100720 4084724 ~ 4101953 (-)
CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding upstream 197259 4181263 ~ 4188590 (-)
CI01000016_04226585_04232287 NA coding upstream 242435 4226439 ~ 4232287 (-)
CI01000016_04264738_04270463 ABHD16A coding upstream 279925 4263929 ~ 4272171 (-)
G96729 NA non-coding downstream 6656 3973807 ~ 3974048 (-)
G96728 NA non-coding downstream 8860 3969511 ~ 3971844 (-)
G96719 NA non-coding downstream 12807 3967342 ~ 3967897 (-)
G96695 NA non-coding downstream 27722 3896035 ~ 3952982 (-)
G96724 NA non-coding upstream 2798 3986802 ~ 3988814 (-)
G96736 NA non-coding upstream 8607 3992611 ~ 3992823 (-)
G96742 NA non-coding upstream 19341 4003345 ~ 4065351 (-)
G96788 NA non-coding upstream 81531 4065535 ~ 4065881 (-)
G96789 NA non-coding upstream 84349 4068353 ~ 4068554 (-)
G95070 NA other downstream 995063 2985260 ~ 2985641 (-)
G94786 NA other downstream 1704429 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 928704 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1341515 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1428255 5412248 ~ 5415906 (-)
G97341 NA other upstream 2174982 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4904829 8888833 ~ 8894737 (-)

Expression


Co-expression Network