G96857


Basic Information

Item Value
gene id G96857
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4401724 ~ 4413705 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU110197
TGATTAATCGCGATTAAAATTTTTAATCTATTGACAGCACTATTATAAATCCATTGGGTGTTTTGATGAACTAAAAAGAACCTGAGTCATTTGCTCGGGAATCGGACTTTACTTGTTTGATTCACTAAAAAGGTTTATAAGAGTAATTTGTTAAGGAATTGTACAACCTGGTCATGCTGAGTGTTTTTGATGAACAATAAAGAACAGGTTCATAAGATTCATTCACTTTGGAATCGGACTACATTGGTTGCACTGTATTTTTTGATTCTTGGCTCCCAACCCTTCTAAACAGTATTCAAATGCTTAGATGACTGAACGTGCTCACAGTGACAGTAGCCAGCAGACCCTCAGGCACATTAGCGACAATGATTCCGATGAGGAAAATGACAGCCTCCAGCCAGGAGTATCCCAAAATGATTGACAGAACGAAGAAAGACAGTCCCAGGAAGACAGCCACGCCTGTGATGATGTGAATAAAGTGCTCAATCTCCTTGGCGATGGGGGTTTTCCCTGTCTCCAGTCCTGAGGTCAGCGTAGCAATGCGGCCCATCACGGTGCGGTCACCAGTGCAGACCACAATACCACGAGCAGTGCCTAACAGTGAAACAGAAAAAGTCACGCTTCTGAACTTGACTTTTATGTAGATAAACCAATTCAACACTGTAGTAAATCCCTCACCTTCCACACAGTTAGTGGAGAAGAAAGCGATGTTGCGGGTTTCCAGAGGGTTGTCATGAGTGCAGTCAGGTGATCTTGTCTGAGGTTCTGATTCGCCGGTGAGGGAGGAGTTATCCACCTATGTATGATGCCAAAGACACACAATTGTCCACCACAGGTTTCACAGATTCTTGACAAACGACTGAGGTTTATAAACCACGTACCTTGCAGCCATGAGAAGAGACGATTCTGAGGTCAGCTGGGATTCGGTCTCCACCTTTGACCTCCACCAGGTCGCCTGCTACCACTTCCTCAGCATTGATCTGCATCTTCTCTCCTTCACGAATCACTAACGCTTGCTGTAGACAGAAAGAGTGTCAATTCTATTCACTGTTTCTTTGTGTTTCTGTGTCTTTTAATTTTTGCATGGAATGTTGTCAGTACCTGTGGCACCATGTTTTTAAAGGACTCCATGATCTTGGAGCTCTTTGCCTCCTGGAAGTAGGAGAAGCAGCCAGTAATGATGACCACAGCAGACAGCACGATTCCATACACACATTATCTCCAGCCGGCTCGTCTTCGGTGGCAGCCTGAATAGCATAGGCCAGAAAGCAGAGAATGGCTCCGGTCCACAGCAAGATGGAGAAACCACCAAACAGCTGACGACAGAATTTAATCCACTCAGGTGTTGTGGGTGGAGGGGTCAGAGCATTTGGCCCGTCTCGCAACAGAAAATCTCTGGCCTTTGCATTAGTTAAACCCTTTTGCAGAGAGAGAAAGAGAGAGATCATTGTCAAAATTAATCATTAGCAAAAGTTACTATTAATACACATTCGGTTTTATTTTAAGTACTCACAGTGTAAATATATTATATATGTTGTGTACTAATA
>TU110196
TAGTTGTTTTTTTTTTTTTGTCACATCTCATATTATACAATTCTTACAAGTTCTCTCTCACACACAGTCACAAAAACTTGCAAAGGATTGCTTTCTTAGATATTTGAAGCAGTAAGATATGTGAAAAATAAAGAGTCAGGCATCACTTGGTAGTATTAAATGTACTAGATGTTTTATTGGATTTGACCTTTCATATACATGATTCTACCAGTAGTTTTGTCTTTCTGTCTTTAGTCTCAACATCCACACGTCTGTCATATGAACAGCCAATGGCCGACTGCAGCAGCACACTCATTGTCCCTCATCACGCACACACACACACACACACACGCAGACACTCACGCACATACAGACCACATGACCCAATACTGCTTCATACAGATGGCATCTCCTGATAAACCAGCGGTGGAACCCACACACACCAGGCTCAATTGATTGGTCCAGAAATGATTTAGACAATAAAGTTTGAAGTTTAGATAAAATTTGTTTCTCAAGTGAGAACAAATGGTTTAAGTTGATATGACAGATAAACACTGAAATCTACCTTCACCAGTTAATGTACCGAAAGAGCAAATTTAACTGGGAAACAATAAAACCTGGTGTGTTTAGGTCCGTGACGGCAGTGGATTTTATTCCAGAGATGCTGTTCAACATCATACTAGTTTTCTGTGCAAAACCTGATAGGAATCTGACTTGCTTCCTGTGTGTTTCAGTCAAATGAGTTAAAACACACAAGAGAATCTTTTTTTACTGTTTTTCAGTGTTTCTATCTTCCAAGATTTGTCTTCATTTGTTTAATCAGTCGTTGTATTGTTTACATTTTCCCTAAAACATGGAGTTTGAGAGTGTATTGAAACATTTGGGGTTATTGTAGCGGTCAAACAAGCACACAAACAAAGACAAAGAGCGAACATCAATGAGAGAGAGAGAGGATGCTAACATCAATCAAACTAAAGTAGAAAATAAAAAATAGAAATAAAAATTCAAAGCCACCGAACCACCTCCGTTAGAGATTAAAGAACATGAAATGTCCTAAGAAGCAAAAGTATTAACAAAATGGTGAAAGTTACTATGTTAAACGGAGTCTAGTGTGTGCGTGTGTGTGTGTGTGTTAAACTCACTTGAGCGGGTACATCCTGAGGGCCACATCCATGCCCGGGCAGTATGAGAGGAATGCAGCGAGAGCTGTTTCTTCAAACAGCCCAAAGATCAGAATCTTATTCCTGTAAAAGGACAAGCACAGTTACATCAGTTGTTCTCATGAATACAAACACACACTTCCTGCACACACACTTCCTGGACTCACTTCATGCCCTGCTGGAATACTGAGTTGCGTCTGGTCTTGCAGATGATGACATCAGCCCATTGTACAACCACAATACTGACAAAGAACGCTGTGTGACATGTGAACTCAACAATCTTCCTCTGCTCGTATGTCTGTGAAACACGAACACAACATCTTACTACATGCAGGGACCTCTGAGATTTGTACGACGTCTAAACACTTATGACGTCACAACATGTTAAAACACAAGATACCTACCCACTGCTGTCCGTAACTGTCCTCCAGGTCATTTAGTGAGCGGTCATCCCAGTTGAGCCTGATACCCACCAGCAATGAGGGCAGGAAGCCATTCTCAGCCAAAATCACAAAGTAGCTGAAGAAACCACCCAAAGCCTGGATCATACCTACACACACATACACATATATGTTTACTTTTCTTTGCACAGATGCCTACACAATATTTGTTTCTCTTGTGAGAAAATAATATAAAGTAATAATAACAAACATGTATTAAAATAATTTTACAAAACAATATAATAGTTAAATGCTGTTTCATTGCTGTTTTCAGACAAGTTTATCATATTTTCTAGTTTTATTTTTGGTACTATGAGTAAATCTGTAAATAAATCTGTTCAAATGTTTAATGCTTCATGTTTAAAGTTGCATCGCCTAACTGATATATACACTAGTATATACTTGTATAACATTTTTGCTAATTACCAATTACACAAAAAAACACAATTTTTAGTTCCAGGTTTTCCTTGACCATGGGAACCCTAATATTAGTAGCTTGAAGCACAGCTGACTACTTTTCCAAAAGGGCATCTTGACTGTAGTTCTGTAGGTCTTTAAATAAAGTAAAAGCTTTAGTAAAAACTACAGTTTCAAAGTAGTACGAGACTAACCAATTTGTCCGTAAGCAATGCTGATGAGACGCTCGTTCACAAGTTTGTCTCTCTGAGGGTTCCTGGGCTGCCTCTTCATGATGTCACTCTCAGCAGCCTCATAAGCTAAAGAAATAGCAGGTACCTATGGAGGTAGAGAGAAAGTAGATTTTTGTGTATGGCTAAACATTTTATTCATGTTTGTTTGTATATGGGTGTGAGTAAGAAAGCTGAATGTCGAGTGTGAGAGTAGGTAATTATTTTTCCTATGCATGTGTATATACTTATGTCAATGCATTTTTTACAATTATTTGAAGTGCTTACCATGTCAGTTCCCAGGTCAATACAGAGGATGGTGATGGTGCCCAGCGGCAGAGGGATATTGACAATAATGAAGAACAGGAAGGGGGTGATCTCAGGGATGTTGCTGGTCAGGGTGTACGCAATGGATTTCTTCAAATTATCAAAGATGAGTCGGCCTGCAAGGGGATAAAAGGATTGTTTGACAACATCAGTCCTGTCCTTCCATGCACTCCAATTCACTAGTCTCCTTATTGTCTTACCTTCTTCTACTCCAGTAACAATTGAGGCAAAGTTGTCATCTAACAGAATCATGTCAGCGGCTTGTTTAGACACATCAGACCCTGAAATGCCCATAGCGACACCAATATCAGCCTTTTTCAGGGCTGGAGAATCATTCACACCATCGCCTGTTACAGCCACAATGGCCCCCTGAGTGACAGAAAAAGAAACAGAGGAGAAAAGGGAAAGAAAGGAAGGTAAAATCAGGACATGATGATTGAAATGACAAAAGATCACAAACCGTATTGAATGATAGGATATGCATTTACCTGTCGCTGGCAACCCTCTACAATGATGAGTTTTTGCTGAGGAGACGTCCTGGCAAACACAATCTCAGTGTGGTTCCGCAGAACGTCATCTATTTGCTCCTGAGAATAGTCCTTCAGATCTGTTCCATGAATCACACAAGCTTTGGCATCCCTAAAACACAAACAAAATAACACATATAAATACACTACTATGTGTTTATAACTTATTAAAGGTGCAGTCACGTGCTGCAAATTTTTTTCATTTCAATAGTAATCTATTTGATCAGGAATTTTGCATAAGGGTGAGATATGCCCACACAGATTTCGCAACTGCTTCAAATTGGCCATGAAAATTTGCCACGTTGACCAACAGGAAGCTGCTTGGTTTTCAAATGACTTCTGTGTAAGCTGTGCTTCACCCATCAAAACAGATCCTTTTTTGCTAACAAAATTCCACTAATGTGACCACACCTTTAATGCATGTTGAGGGGCTGTGTGCATTTACAGTGTTGATCCCTGCTTTACCTGGGATTGACCTGACTGACGGGGATGTTGAGACGGGCAGCGATGTCTTCCACAGTCTCATTACCCTCTGAGATGATGCCCACACCCTTGGCGATGGCCTTGGCAGTGATGGGGTGATCTCCTGTCACCATGATGACCTTGATTCCCGCAGAACGGCACTTTCCCACGGCATCGGGCACGGCAGCGCGGGGCGGGTCAATCATTGACATCAGTCCCACAAAGCAAAGATTGTCTGTCTGGAAATTCACATCATCTGCATCAAAGGCAAAGCCTTTTGGGTACTGGTCCTCGGGCATTAAGACATGGCAGAATCCTGGAGGCAAAGGAGGCAAGTTTACTCATTTTTAATTATTATATACTATAATAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110197 False 1547 lncRNA 0.44 2 4401724 4403376
TU110196 True 3894 lncRNA 0.40 2 4407252 4413705

Neighbor

gene id symbol gene type direction distance location
CI01000016_04385978_04389107 NA coding downstream 11654 4385722 ~ 4390070 (-)
CI01000016_04370577_04377413 NA coding downstream 23607 4370042 ~ 4378117 (-)
CI01000016_04333323_04333836 NA coding downstream 67888 4332873 ~ 4333836 (-)
CI01000016_04300720_04301736 NA coding downstream 98217 4300649 ~ 4303507 (-)
CI01000016_04277441_04297655 NA coding downstream 103507 4276958 ~ 4298217 (-)
CI01000016_04422169_04424433 RABAC1 coding upstream 8290 4421995 ~ 4424433 (-)
CI01000016_04636548_04646848 ZNF526 coding upstream 222122 4635827 ~ 4646916 (-)
CI01000016_04696937_04698098 NA coding upstream 282980 4696685 ~ 4698618 (-)
CI01000016_04802496_04812976 NA coding upstream 388749 4802454 ~ 4813266 (-)
CI01000016_04921091_04922518 NA coding upstream 507163 4918975 ~ 4922518 (-)
G96872 NA non-coding downstream 33036 4368379 ~ 4368688 (-)
G96758 NA non-coding downstream 33753 4322405 ~ 4367971 (-)
G96810 NA non-coding downstream 218757 4182501 ~ 4182967 (-)
G96792 NA non-coding downstream 279349 4120516 ~ 4122375 (-)
G96793 NA non-coding downstream 281373 4118297 ~ 4120351 (-)
G96909 NA non-coding upstream 68244 4481949 ~ 4482313 (-)
G96912 NA non-coding upstream 72177 4485882 ~ 4486133 (-)
G96936 NA non-coding upstream 81707 4495412 ~ 4513049 (-)
G96943 NA non-coding upstream 107505 4521210 ~ 4521422 (-)
G96948 NA non-coding upstream 123975 4537680 ~ 4539061 (-)
CI01000016_03921124_03930996 NA other downstream 470673 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 736411 3647653 ~ 3675585 (-)
G95070 NA other downstream 1416083 2985260 ~ 2985641 (-)
G94786 NA other downstream 2125449 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 911814 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 998554 5412248 ~ 5415906 (-)
G97341 NA other upstream 1745281 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4475128 8888833 ~ 8894737 (-)

Expression


Co-expression Network