G96948


Basic Information

Item Value
gene id G96948
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4537680 ~ 4539061 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU110316
TTTTTACAAATAAATTGGCCAATTCTATACAGGTTGTCGATTTATTTTCTTTGTTTAAGCAAAGTTATTTGATGTTTATTTGCTCTTTATAAAACGGTTAGTTCCTGTCCTTGATTCTGATTGGTCAATAACTGTGTTTTATTCACGATAAAACATGGCTATGACCGCTTCACCCAACAGTTCTGTGAATCACTACACAACACCCTTAGCAACCACTCTTAGCAACATAAACTGTTTGTTCTCAGTTGATATTGTTTATTGAAGCTTACTGTATTATGTAGAAGAGTATTGTGAGAAAGAGATCGATTGAGCGAGTTTATTACCTGCATTCAGATTTAGAATTTTCCTTCAGGTCAATCCATATGTTCATAATAAAAATCTGTTTAAATGTCTCATGTATTATCTTGTCCTTTTAACAGTTAAGGGGTTTTCCCGTGACTGACAGCGCTAGTCAAAGCATTTGTCAGTTGCATCTTGTCCCGTGTTCACAACAATTCAGTCTTTTCAATGTAAAAGTATTCACTACTGACTGACACTCATAAAGACAGTCTTTGCCGCCATCTAATGGCGTTATAATGCAACGTCTGTTGCTGTTCACGGTCAGGGACTATTTTTCCGGCGGAAGGAAGGCTTTTGGTGAAAGTTTACTTCATGAAAGTTGCACTAATACATATTTTTGGCTTTAATATTTGTATTGTGTGGTAATCGTTTTATAAAAGCAATAAGGTACTCGAGGCTAGTGCTGTATCGTACCTTATTGCTTACATAACAGCCCAAACTGGCCTTTAACAAAAAAAATATCTGTAGCCATTTGAAATTAGAGAAAAACACTGAATTTAATCATGATACAAACAAAGATACTACAAACATGTAGCATGAGCAGTTGTTTAAATTAGATTGTATAATTTCAAAATTTAAAGCAAAAACTGAATGGTCTGACTTTAGATTTGTGCCACATATGACACACTTGCATAAAACAAAAACAGCAGACAGACTGAACGAAAATGCTAATTCACTCTCCGACAGTAAGTGGCGCTTATAGAACAACGGCAATTTAGCATTTGCTCGGTTACCGCTGTACAAATCAGCCCTGCGCTTATAAACTGGCATTATAGAGAGGAAGAAAAGAGGAAAAAGATAATGTCATCGAAACTTTTCTGAAGACAGTCACTTCCCTTTAGAGATACATTCATATAAACCCCTAATCCCAATTCAATATTTATATTTTTCTTCCAATATTTCGGTCATCACGAACAGTGAGCTGCAGTCTTCAGGGTGTCCCGTCCTGTTTACAGACTTGTAATGTTTCCACACAAT
>TU110317
TTTTTACAAATAAATTGGCCAATTCTATACAGGTTGTCGATTTATTTTCTTTGTTTAAGCAAAGTTATTTGATGTTTATTTGCTCTTTATAAAACGGTTAGTTCCTGTCCTTGATTCTGATTGGTCAATAACTGTGTTTTATTCACGATAAAACATGGCTATGACCGCTTCACCCAACAGTTCTGTGAATCACTACACAACACCCTTAGCAACCACTCTTAGCAACATAAACTGTTTGTTCTCAGTTGATATTGTTTATTGAAGCTTACTGTATTATGTAGAAGAGTATTGTGAGAAAGAGATCGATTGAGCGAGTTTATTACCTGCATTCAGATTTAGAATTTTCCTTCAGGTCAATCCATATGTTCATAATAAAAATCTGTTTAAATGTCTCATGTATTATCTTGTCCTTTTAACAGTTAAGGGGTTTTCCCGTGACTGACAGCGCTAGTCAAAGCATTTGTCAGTTGCATCTTGTCCCGTGTTCACAACAATTCAGTCTTTTCAATGTAAAAGTATTCACTACTGACTGACACTCATAAAGACAGTCTTTGCCGCCATCTAATGGCGTTATAATGCAACGTCTGTTGCTGTTCACGGTCAGGGACTATTTTTCCGGCGGAAGGAAGGCTTTTGGTGAAAGTTTACTTCATGAAAGTTGCACTAATACATATTTTTGGCTTTAATATTTGTATTGTGTGGTAATCGTTTTATAAAAGCAATAAGGTACTCGAGGCTAGTGCTGTATCTTATTGCTTACATAACAGCCCAAACTGGCCTTTAACAAAAAAAATATCTGTAGCCATTTGAAATTAGAGAAAAACACTGAATTTAATCATGATACAAACAAAGATACTACAAACATGTAGCATGAGCAGTTGTTTAAATTAGATTGTATAATTTCAAAATTTAAAGCAAAAACTGAATGGTCTGACTTTAGATTTGTGCCACATATGACACACTTGCATAAAACAAAAACAGCAGACAGACTGAACGAAAATGCTAATTCACTCTCCGACAGTAAGTGGCGCTTATAGAACAACGGCAATTTAGCATTTGCTCGGTTACCGCTGTACAAATCAGCCCTGCGCTTATAAACTGGCATTATAGAGAGGAAGAAAAGAGGAAAAAGATAATGTCATCGAAACTTTTCTGAAGACAGTCACTTCCCTTTAGAGATACATTCATATAAACCCCTAATCCCAATTCAATATTTATATTTTTCTTCCAATATTTCGGTCATCACGAACAGTGAGCTGCAGTCTTCAGGGTGTCCCGTCCTGTTTACAGACTTGTAATGTTTCCACACAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU110316 False 1317 lncRNA 0.36 2 4537680 4539061
TU110317 True 1312 lncRNA 0.36 2 4537680 4539061

Neighbor

gene id symbol gene type direction distance location
CI01000016_04422169_04424433 RABAC1 coding downstream 113247 4421995 ~ 4424433 (-)
CI01000016_04385978_04389107 NA coding downstream 147610 4385722 ~ 4390070 (-)
CI01000016_04370577_04377413 NA coding downstream 159563 4370042 ~ 4378117 (-)
CI01000016_04333323_04333836 NA coding downstream 203844 4332873 ~ 4333836 (-)
CI01000016_04300720_04301736 NA coding downstream 234173 4300649 ~ 4303507 (-)
CI01000016_04636548_04646848 ZNF526 coding upstream 96766 4635827 ~ 4646916 (-)
CI01000016_04696937_04698098 NA coding upstream 157624 4696685 ~ 4698618 (-)
CI01000016_04802496_04812976 NA coding upstream 263393 4802454 ~ 4813266 (-)
CI01000016_04921091_04922518 NA coding upstream 381807 4918975 ~ 4922518 (-)
CI01000016_04927541_04930989 PAFAH1B3 coding upstream 387033 4926094 ~ 4930989 (-)
G96943 NA non-coding downstream 16258 4521210 ~ 4521422 (-)
G96936 NA non-coding downstream 24631 4495412 ~ 4513049 (-)
G96912 NA non-coding downstream 51547 4485882 ~ 4486133 (-)
G96909 NA non-coding downstream 55367 4481949 ~ 4482313 (-)
G96857 NA non-coding downstream 123975 4401724 ~ 4413705 (-)
G96960 NA non-coding upstream 47199 4586260 ~ 4586530 (-)
G96961 NA non-coding upstream 48490 4587551 ~ 4587793 (-)
G96962 NA non-coding upstream 49970 4589031 ~ 4589245 (-)
G96963 NA non-coding upstream 57564 4596625 ~ 4596862 (-)
G96964 NA non-coding upstream 59473 4598534 ~ 4598792 (-)
CI01000016_03921124_03930996 NA other downstream 606629 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 872367 3647653 ~ 3675585 (-)
G95070 NA other downstream 1552039 2985260 ~ 2985641 (-)
G94786 NA other downstream 2261405 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 786458 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 873198 5412248 ~ 5415906 (-)
G97341 NA other upstream 1619925 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4349772 8888833 ~ 8894737 (-)

Expression


Co-expression Network