G96915


Basic Information

Item Value
gene id G96915
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4620698 ~ 4627441 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU110268
TCTCACAGAAGTGAGTACACCCCTCACATTTTTGTAAATATTTTATTATATCGTTTCATGTGACACCACCAAAGAAATGACACTTTGTTACAATGTAAAGTAGTGAGTGTACAGCTTGTATAACAGTGTAAATTTGCTGTCCTCTCAAAATAACTCAACACACAGCCATTATTGTCTAAACCGCTGGAACGCTTATTAGAGCTCTCACAATGTTTTATTAAATGTGTGTATCCTCACCTCTGGCTCCTGGGCTAACCACTCCCACAGCAGGACTAGAGACGTACCCCGACTGCTTCCCGTTGGCCAGTGAGGCGTGAGTGGGCAAAGCTGTGGGTAAGGTGAAGATACTGGTTGGCTGACTGGCCTGCTGAGGAGAGGGGCTCTTGGGATTGTTGGCAGAGAGGGTAGGGAGAATGTACTGGACCTGTGTTATCGGTTTTTGGCCTGACGAGGGCCCTAATGAGGCGGAGGGGAGAATGTGTGACTGCAGCACGGGCAGAGGCAGCGGACCGTTACTGTGAGTAAGCGGGGCCGATGCTGGGGAGGCTGGGTTTTGTGGAGGAGGAGGTGTGACAAGCTGTACAGTGGGTGGAGCCTGGAATGTGCCTCCCAAAACTAGATTGGTCACCAGCCCCCCTTGACCTGCTGATGCACTAACAGGATTGGGCGATGATGAGGAATAGTACCCACCCCCTCCAGCTGAAGCTGTTGCTGTGTTTCCTGTGGCACCAGGGCCGATGAGAAGCTGTGTCTGGGGCGGAGCAGGTTTCCTTTCATGTGGGGACTTGCTGGCGATTGGCACTGGTGTGCTGACCACAGGACGCACCACATTAGTGACGACAGTGGACGCCACTCTCACCGCTCCTAGAACTGATGACACTCCCCCGCCAGAACTGACCAGGATGGACTGACCTCCAGAAGACTGGGACACACCTCCTTCACCTTCCCTTCGCTCTCCATCACCTCCCTCCATTGTTCGTTTTCTTTTCGAGGAAGTGTCGCTAAAGCGTCTAGAAGTGGGGTAGGAGGAGAGAGACACGCTCCGACCATGACCAGGGCCGTAAGACGAGGAGCAAATCACTGGAGCAAAAACTCTCTGATGAAAAAGAATAACATGCAAAAAGAAGAACATAAATTTACCAAAGGCAGC
>TU110269
CTTAAAAGTCTATCATACCAGAATGTGAGGGTTGAGCAGGGCTTCCAGGCTGCAGTGGCACTGAGGTGCCCTGTGAAGGCGCAACTGAGCTGCTACCGCCCTTACTCGGGACCTGGAACTGTTTGTCTGGCTGTAAGAGAGAGACCTTCTCTGTCTGTCTCTCAGAGGACTGCGTGTAGCCCGGACTGTCTGTGTGCTGCCGGTCCAGTGTTCTCTCCTGGTGCAACTGTCTCTCAGAATGTGCAGATACGTTCCCCTGCCTATCCGAGGTTACAGAGGTCATGGAGTTAGTTGTGGTGTGTTTAGGAAGGATGTGTGAAGATAGGCCAGAGGAACTGGACACCGTGTACACCACACTTGGTGACACTGTCGCCATAGACACCACACCAGTTGCCAAGGTCACATTTGTAGGGGTGTAGATGGCGGTGATGGCAGGAGCGTGAGGGGCACTGGGAGACTGTGCTGGGGCCAGCAGCGATGGCTGACCTGCAATCAGTGGCTGCACCAAAGTTTGTCCTGGATGAGCGATCGCTGCAAAGGTCGCCAAGGGTGACTGCACATAAGCAGATCCAGGTGCTGCTGAAGCTGTCTGAGAAGAGGAGCCTGTTGTGGTGGAAACTAATGGCAGAGGAGAAGGAACCCCAGGAGTGGACTGTACATAAGTGATTCTGTGGGAGAAAAAGTGATATTCACAGAAACCAGATTAGACAGCTTTTATAATGAGAGCAGCAAGGCAGGGTTATTCTCTAGTGCTGCAGCACTTCAGGAGTGTAGGAGTTGTTAAAATAAGAGTGGGGGAGATGTTTGTGCTTATGCAGCTAGGTGAGTATAAGTATGCCTGTGAGAGTGTGCAATATACCTTGTTGGTGGGGGCGGTAGCAGCACGGTCTGAGACGGGGTAGAGCCTGGGGCGACCACTGTAGCTGTTCCCATAGTAACAGAAAAAGGGCTCCCAGGTTGCACTGGTCCCGTAGAGGGGAGTTGTGACTGGACGACAGGCATCGGAGCAATCTGAATAATCTTGCTTCCTGCCTGTGCTCCATTCTGAACAGGAAGAGGAGGGGCTACCAAGGGAAACTGCTGAGAGGGGGCAGGAGCAGCCCTCACTGTTGCCATGGGAACCAGCATCTTGCCCTGCAAGACTGGTGACTGTGTTTGCACTGCAGGAGGGAAAAAAGAAGAACAGAGTGTTTAAAATAATTGGGTCTTGCACAGACTGTCTTATCTGGCATAGCACAAAACTATGGAGAACAGTACCTAAAAGCCAAAGCCAACATGATGCTACAATGTAATAATACAATGAAAAAGACAATAGGCACTTTCACACATACAGCCTTTTGCTAAAAATTAACAGCATTTTTCTGTTTAGAAATCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110268 False 1150 lncRNA 0.52 2 4620698 4623302
TU110269 True 1377 lncRNA 0.50 3 4625440 4627441

Neighbor

gene id symbol gene type direction distance location
CI01000016_04422169_04424433 RABAC1 coding downstream 196265 4421995 ~ 4424433 (-)
CI01000016_04385978_04389107 NA coding downstream 230628 4385722 ~ 4390070 (-)
CI01000016_04370577_04377413 NA coding downstream 242581 4370042 ~ 4378117 (-)
CI01000016_04333323_04333836 NA coding downstream 286862 4332873 ~ 4333836 (-)
CI01000016_04300720_04301736 NA coding downstream 317191 4300649 ~ 4303507 (-)
CI01000016_04636548_04646848 ZNF526 coding upstream 8386 4635827 ~ 4646916 (-)
CI01000016_04696937_04698098 NA coding upstream 69244 4696685 ~ 4698618 (-)
CI01000016_04802496_04812976 NA coding upstream 175013 4802454 ~ 4813266 (-)
CI01000016_04921091_04922518 NA coding upstream 293427 4918975 ~ 4922518 (-)
CI01000016_04927541_04930989 PAFAH1B3 coding upstream 298653 4926094 ~ 4930989 (-)
G96970 NA non-coding downstream 15164 4605090 ~ 4605534 (-)
G96969 NA non-coding downstream 16184 4604074 ~ 4604514 (-)
G96968 NA non-coding downstream 16770 4603579 ~ 4603928 (-)
G96967 NA non-coding downstream 17568 4602831 ~ 4603130 (-)
G96966 NA non-coding downstream 18269 4602202 ~ 4602429 (-)
G96921 NA non-coding upstream 597 4628038 ~ 4629281 (-)
G96916 NA non-coding upstream 22046 4649487 ~ 4654397 (-)
G96977 NA non-coding upstream 37318 4664759 ~ 4664982 (-)
G96983 NA non-coding upstream 59420 4686861 ~ 4687114 (-)
G97050 NA non-coding upstream 189189 4816630 ~ 4897720 (-)
CI01000016_03921124_03930996 NA other downstream 689647 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 955385 3647653 ~ 3675585 (-)
G95070 NA other downstream 1635057 2985260 ~ 2985641 (-)
G94786 NA other downstream 2344423 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 698078 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 784818 5412248 ~ 5415906 (-)
G97341 NA other upstream 1531545 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4261392 8888833 ~ 8894737 (-)

Expression


Co-expression Network