Gene
RNA
| Item | Value |
|---|---|
| gene id | G97097 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 4962586 ~ 4963644 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU110477 | True | 1059 | lncRNA | 0.39 | 1 | 4962586 | 4963644 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_04936283_04939240 | TLR21 | coding | downstream | 23346 | 4936013 ~ 4939240 (-) |
| CI01000016_04927541_04930989 | PAFAH1B3 | coding | downstream | 31597 | 4926094 ~ 4930989 (-) |
| CI01000016_04921091_04922518 | NA | coding | downstream | 40068 | 4918975 ~ 4922518 (-) |
| CI01000016_04802496_04812976 | NA | coding | downstream | 149320 | 4802454 ~ 4813266 (-) |
| CI01000016_04696937_04698098 | NA | coding | downstream | 263968 | 4696685 ~ 4698618 (-) |
| CI01000016_04971399_04981029 | NA | coding | upstream | 7698 | 4971342 ~ 4981400 (-) |
| CI01000016_04995532_04996727 | NA | coding | upstream | 31168 | 4994812 ~ 4996727 (-) |
| CI01000016_05011639_05013290 | NA | coding | upstream | 46129 | 5009773 ~ 5013290 (-) |
| CI01000016_05037135_05040030 | NA | coding | upstream | 73491 | 5037135 ~ 5041364 (-) |
| CI01000016_05052905_05056425 | NA | coding | upstream | 88731 | 5052375 ~ 5056425 (-) |
| G97096 | NA | non-coding | downstream | 2433 | 4959898 ~ 4960153 (-) |
| G97092 | NA | non-coding | downstream | 4848 | 4957517 ~ 4957738 (-) |
| G97091 | NA | non-coding | downstream | 5142 | 4957201 ~ 4957444 (-) |
| G97050 | NA | non-coding | downstream | 64866 | 4816630 ~ 4897720 (-) |
| G97098 | NA | non-coding | upstream | 764 | 4964408 ~ 4964631 (-) |
| G97100 | NA | non-coding | upstream | 2450 | 4966094 ~ 4966306 (-) |
| G97101 | NA | non-coding | upstream | 3358 | 4967002 ~ 4967302 (-) |
| G97037 | NA | non-coding | upstream | 5745 | 4969389 ~ 4970780 (-) |
| G97045 | NA | non-coding | upstream | 104040 | 5067684 ~ 5073528 (-) |
| CI01000016_03921124_03930996 | NA | other | downstream | 1031535 | 3920055 ~ 3931162 (-) |
| CI01000016_03647744_03675574 | NA | other | downstream | 1297273 | 3647653 ~ 3675585 (-) |
| G95070 | NA | other | downstream | 1976945 | 2985260 ~ 2985641 (-) |
| G94786 | NA | other | downstream | 2686311 | 2270836 ~ 2276275 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | upstream | 361875 | 5325519 ~ 5332874 (-) |
| CI01000016_05412782_05415867 | NA | other | upstream | 448615 | 5412248 ~ 5415906 (-) |
| G97341 | NA | other | upstream | 1195342 | 6158986 ~ 6159721 (-) |
| CI01000016_08893013_08893496 | NPPCL, ANFC1 | other | upstream | 3925189 | 8888833 ~ 8894737 (-) |
| CI01000016_08926089_08945071 | NA | other | upstream | 3973145 | 8925960 ~ 8945229 (-) |
