G97012


Basic Information

Item Value
gene id G97012
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5192792 ~ 5204813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU110387
GTAGAATAACTTGAGACAACAGTAAAATTAGTTCTACACTTCTGAAACATTTATTAGAATATTTCTGTCTTATCCTTTATACCAAATAATGTTGGTTATTACATATGAGCACCTTCGCGACAGGCCAGTCAGAGAGAGACTCTTTGAGGGACAGGAAAACATCAGGACAACCACATTCATGGAAAGTAGTTTCACTTGAAATAAGATGTTGAGGATGATTGACTTCCTAATTTTGACACCGTGTACACAAGAATGTTGGTAAACATTATTCAAGTAGAGGCGTGGGCCCTAAAGCCCCATGATGGTTCTCATTACAGTCCTGTACTTCACTACACAAATGGGAGGGTTTAGTAGAACACTCTCAGTTGCATGTGTTTCAGTGAAATAAAACCCTTGAGTTTTAATCAATCTGTCCCTTTATAATAACAATACAAAAAACAAAAGTGAAACAATTGCAACAAAACCACGATAACACTTTCTAAAGAAGAGCAGGATTTGGGAGCAGACCTAAGCCCTAAGGTTTAGATAGATGATGGTTTCAGCTCTTTATGCTTTCGCATTAATAATGTCGATAAACTCTGGTTTCAGGGAAGCGCCGCCCACCAGGAAGCCATCCAGGTCTTTCTGAGAAGCAAGCTCCTTGCAGGTCCCTCCAGTGACAGACCCTGAAATGGACTGACCTCCATAAATGATTCTGACGGAGCTGGCAACAGCCTCTGAGACGTTGGCCTTCACCCACTGCCTGAGCTTTTCATGCACCTCCTGAGCCTGTAAGAACAGCAGAAAGAGACTGAGTCACTGAGGTAATTGAAACCAGGCAATATGTATGAAAAACCTCCATGTTGTAATCGGCTCTTCTGTACCTGTTGGGGCGATGCAGTTTTCCCAGTGCCAATGGCCCAAACAGGCTCATAAGCAAGGACCACTTTGCTCCAGTCCTTCACATCTGCAATGAACTTGGTCTGTGCAAACACAACTTTCTCCGTGATTCCGGCCTCCCTCTCATCCAGCTTCTCACCGATGCAGGCGATCACACCCAAACCGTTCTCAAGAGCATGAGCAATCTTCTGTCCAATCAACCTCATCACTCTCTCCAAACACATGGCGTCTCTCAGAGTGTCCCAGAATCACCCATTTTACTCCACAGTCCTTAATCATCGCTGGCTGATCTCTCCGGTGAAGGCTCCCTTTGCAACCTTGTAGCAGTTCTGTGCAGCAACTTCAATGTTAGGATTCAGCTTGGACCTGGCGTAGTCGAGGTAGATGGATGGGGCTCCACACACAACCCGGTGTCTGGGTTGAGTTTGGCGCTATTCAATGTCTTGGCGAGCTCTTCAATGCTCTTTTTGTCGCCGTTCATTTTCCAGTTGCCACCGACGAAAAACTTCCTGCCAGTCATGACTGCAAAAGTGTTACTTTTACCAGAAAATACTTGATGTTGGAAACAAACGGAGATCCTCCAGTCGAAGAGACAGCGAGGAAATACAGTCCGCTTGA
>TU110388
GTAGAATAACTTGAGACAACAGTAAAATTAGTTCTACACTTCTGAAACATTTATTAGAATATTTCTGTCTTATCCTTTATACCAAATAATGTTGGTTATTACATATGAGCACCTTCGCGACAGGCCAGTCAGAGAGAGACTCTTTGAGGGACAGGAAAACATCAGGACAACCACATTCATGGAAAGTAGTTTCACTTGAAATAAGATGTTGAGGATGATTGACTTCCTAATTTTGACACCGTGTACACAAGAATGTTGGTAAACATTATTCAAGTAGAGGCGTGGGCCCTAAAGCCCCATGATGGTTCTCATTACAGTCCTGTACTTCACTACACAAATGGGAGGGTTTAGTAGAACACTCTCAGTTGCATGTGTTTCAGTGAAATAAAACCCTTGAGTTTTAATCAATCTGTCCCTTTATAATAACAATACAAAAAACAAAAGTGAAACAATTGCAACAAAACCACGATAACACTTTCTAAAGAAGAGCAGGATTTGGGAGCAGACCTAAGCCCTAAGGTTTAGATAGATGATGGTTTCAGCTCTTTATGCTTTCGCATTAATAATGTCGATAAACTCTGGTTTCAGGGAAGCGCCGCCCACCAGGAAGCCATCCAGGTCTTTCTGAGAAGCAAGCTCCTTGCAGGTCCCTCCAGTGACAGACCCTGAAATGGACTGACCTCCATAAATGATTCTGACGGAGCTGGCAACAGCCTCTGAGACGTTGGCCTTCACCCACTGCCTGAGCTTTTCATGCACCTCCTGAGCCTGTAAGAACAGCAGAAAGAGACTGAGTCACTGAGGTAATTGAAACCAGGCAATATGTATGAAAAACCTCCATGTTGTAATCGGCTCTTCTGTACCTGTTGGGGCGATGCAGTTTTCCCAGTGCCAATGGCCCAAACAGGCTCATAAGCAAGGACCACTTTGCTCCAGTCCTTCACATTATCTAAAATAGATGATAGTCTTATTTTAAATACAAGAAATGTTTAATAATATATATATACACACACACTTCACTAAATTGAAAGATACCTGCAATGAACTTGGTCTGTGCAAACACAACTTTCTCCGTGATTCCGGCCTCCCTCTCATCCAGCTTCTCACCGATGCAGGCGATCACACCCAAACCGTTCTCAAGAGCATGAGCAATCTTCTGTCCAATCAACTATCAGAAAAAATAAATCCAGAGAGGGAGATCAGAAAGTTCTTATGATTTATTAAGTGAAATGGTGACCAGTATATGCTTTAAACTTAAATGTTTCTTATTTTCTTATTTCATTATTACTAAATGTACTAAATGTAATTTTTGTCATTATGTTTAAAGTGACTAATGATATCTATTAAATTCTGTTCAATTCCATTATTTTTGTAAAAATGCTCATTCAGAAACTATGCATGTCAAATCTGCATATCCATAATAGTTGATTTTTAACCACCAAAGTAATAAAATTAAATCACAAGAATGTTTTTGTAATTTTTCTGTTCAAAGAAATGTTATACTACCACAAACACAGTGCTACATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU110387 False 1497 lncRNA 0.45 6 5192792 5204813
TU110388 True 1526 lncRNA 0.38 3 5196398 5204813

Neighbor

gene id symbol gene type direction distance location
CI01000016_05170621_05189845 LPCAT3 coding downstream 2947 5169714 ~ 5189845 (-)
CI01000016_05151082_05166013 CLSTN3 coding downstream 26779 5151057 ~ 5166013 (-)
CI01000016_05131457_05146340 PEX5 coding downstream 46452 5130748 ~ 5146340 (-)
CI01000016_05124385_05128589 CDCA3 coding downstream 63817 5124259 ~ 5128975 (-)
CI01000016_05086983_05098757 UBP5, USP5 coding downstream 94035 5086813 ~ 5098757 (-)
CI01000016_05205373_05206602 NA coding upstream 518 5205331 ~ 5206602 (-)
CI01000016_05208242_05218239 NA coding upstream 2606 5207419 ~ 5219816 (-)
CI01000016_05233964_05243756 NA coding upstream 28843 5233656 ~ 5244368 (-)
CI01000016_05249001_05286683 EPHB6 coding upstream 42747 5247560 ~ 5286683 (-)
CI01000016_05313099_05322439 SLC2A3B coding upstream 107990 5312803 ~ 5322947 (-)
G97139 NA non-coding downstream 1364 5191026 ~ 5191428 (-)
G97135 NA non-coding downstream 69316 5123080 ~ 5123476 (-)
G97045 NA non-coding downstream 119264 5067684 ~ 5073528 (-)
G97037 NA non-coding downstream 222012 4969389 ~ 4970780 (-)
G97101 NA non-coding downstream 225490 4967002 ~ 4967302 (-)
G97148 NA non-coding upstream 136226 5341039 ~ 5341800 (-)
CI01000016_05374626_05378364 NA non-coding upstream 140588 5373845 ~ 5386465 (-)
G97160 NA non-coding upstream 197330 5402143 ~ 5402369 (-)
G97165 NA non-coding upstream 206842 5411655 ~ 5411920 (-)
G97180 NA non-coding upstream 348482 5553295 ~ 5553986 (-)
CI01000016_04921091_04922518 NA other downstream 269388 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1261741 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1527479 3647653 ~ 3675585 (-)
G95070 NA other downstream 2207151 2985260 ~ 2985641 (-)
G94786 NA other downstream 2916517 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 120706 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 207446 5412248 ~ 5415906 (-)
G97341 NA other upstream 954173 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3684020 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3731976 8925960 ~ 8945229 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G112065 NA non-coding NC_056714.1 CM032083.1 13694217 ~ 13701775 (+)