G98628


Basic Information

Item Value
gene id G98628
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8658921 ~ 8675499 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU112236
CTGTGATGAAGGTTGAGCACTTTTCCATTGCAGTTGGGAGAAGGAAGCACGCCCGAATGGGAGGAAGTGACATCGTCACTTTGCGCCAGCCTCATGACTTCCTCCTCATCCAGAGGTGTGTCCACAACTGCACTGAAGCGCCGCTTCACCCGAGCAGCTCCCATTACTGACGACGGCAGACTGACTAAAAAATGTCTGGGAAAAAAGAAGCGTTCAAGAGTTTGCCAGATAAATCCAGGGTCAAAGTGGATTAAAAAATTGGGATGCTTTCGTGAGAATGTTTGCAGTGATATAGATATATCCAATATATGAGTCGTTGATTGTATTCCACAGCAAGGCTTATGGCCTGAAATAGTCCTTATTGTCATTCAGATCCCGGCAGCCAACAGTTGCCCAGAGACGGAACACAATCGCATTAGAGATCATCTCTGACATCCCTCTTTTCAAGATTTATGTAGTCTCTACTTGAGCAATCTGTCCACCATAGGTAGCTGTCAGATATCAGTAAACCAGTATTCCTGGATTTTACTGAACACAAATTTCCAAAGTTGTTAGATGCAGTGAATAAAGAAAAACTTCAGTTTCAATGCAGTTTTTCAGCTTTAGAAACAGTTTTGACAAGGTCAGTTGGTGGGCAGAGACCAGACTGGGAAAACGCTGCTGCTTTAGGCCTATGCGTAACATATAGCAACTACATAAGAAAGTGAGCAACTAAAAGGCACAAACAAACAAGGCGAAGCTCAAGCGGAGCAGAAAGAAGCAGAAGGAAAGTATGGAACTTATATAATATAAACAAGTCTCAAAGCTTTAGAACATATAGGGGAAGTTGAAAAGAACAAATATTTGACGTGCATTAAAATAGTCTAGAACATATGTGTGTAATAAATAAAGAAATAAATGAATATAACAGCATGCATATACAGACCAATTTTCCCTCTAGGACCTCTTCACATTTCCTTATTTAAATGGATGGATGTTTAAAGACACAAGAGAGACATGCAATTAATATGAAAACTGGTCAACATTTCCTAAAATTCCACAGTTGTGACCTCTTTTGTCTTTGATATTGAGCAAATGTAACTCTGGAACACAAAGCAAGTCCATTTCCCAATCATATTATTAGACATTCAAAGAGTCACAAGTGGCATTCTGTCACAGTCATGTATCCATCTTCAGTCTGGTTTCATCCAGTCTCAAGGCAAGAGCCCAGTTCTCCAAAAGAAAGGGTCATTTTGCTCTAAAACTTGAAGTTCTATAACTGAATTACTGGATTATATTTGATAAAGAAAGTCCACACATTACAATGGGAAGAGGTTTAGAGTGAGATTATGACCTGATGAACTTTGGCCTCTCCAAAAGCTTAAAAATGCTAGGTGATGCTTTGAGATCTTCCTCAGAGTCCAAGTCCAGTTTGGTCGTCAAAAAAACACATGCAATTGTTGAAATATCCCTAAAAGTGAACAATAGGCCAGATAAGTGTAAGCTGAAGCACAAACCATTACCTTCATAGATTTCAAAATAAAGTGATTGGGGAACTAAACGTTCAGACCTGATAAGTGGTGTTACCTTTTCATGTACCTCCTTTGAGAAACCTGCAGTTCGATGCTTAATGAACATAATAGAAAAAAGAATCTTTAAAAAAGGTTTCTAGTCACGAAAAGCCCACTTGCACAGAAATATATCAAAGGATGAAATGAGAAAAAAAAAAAAAACTCAAAAGAGAATCAACAAATTGGAGCGTGGAAAAAGAACTTTTCTAAAGTGAGAGGTTAGGTTCATCTTCAAATATCTGCTGCCCTCACACTGACATTTGTGGTAGAATATATCCACAGCAAATACAACTCAAGAATAGTCTGGCAGGCCCCTGTCACATTCCTTATTATCTGAGTCTGCAGTTTTTGCATTGAGGACATCACATGGACATCTGTTAACTCCAATGCTGGCAGTTAACAAAGTACATAGATCCTCAGCCTTCTTTCTTTGCCCATCAAGTCAGCAGAAATCCGCAGCTCATGCACAAATATCATCACATAATAGTCCATATGAGCGTGATGTCTGTTCCATTTCGATTCTATTTCTATAACACTGTTCATTTCATATTAAAGCACAAGTCAAATAAAGCGGCTGCACTGCTGTTTGAGGATGCGTCACATTAAAACGCTTTGCGGCGCGTGAAAGTGTTGCGTGGGCGCTCTCGCGTGCTCTGCTCCGCGCGCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU112236 True 2218 lncRNA 0.40 3 8658921 8675499

Neighbor

gene id symbol gene type direction distance location
CI01000016_08642218_08643021 NA coding downstream 15900 8641441 ~ 8643021 (-)
CI01000016_08605369_08623062 STK31 coding downstream 35859 8605247 ~ 8623062 (-)
CI01000016_08598259_08602660 NPY coding downstream 56261 8598231 ~ 8602660 (-)
CI01000016_08570850_08582638 MPP6, MPP6A coding downstream 76014 8570293 ~ 8582907 (-)
CI01000016_08421119_08444481 PDE11AL coding downstream 213819 8421097 ~ 8445102 (-)
CI01000016_08741387_08746007 NA coding upstream 65483 8740982 ~ 8746066 (-)
CI01000016_08769141_08795202 NA coding upstream 93323 8768822 ~ 8795559 (-)
CI01000016_08800360_08805384 NA coding upstream 122908 8798407 ~ 8805384 (-)
CI01000016_08833925_08836497 NA coding upstream 157991 8833490 ~ 8836497 (-)
CI01000016_08851218_08869647 IFFO1B coding upstream 175373 8850872 ~ 8869647 (-)
G98615 NA non-coding downstream 38391 8620184 ~ 8620530 (-)
G98613 NA non-coding downstream 41457 8617244 ~ 8617464 (-)
G98612 NA non-coding downstream 42322 8616369 ~ 8616599 (-)
G98608 NA non-coding downstream 50031 8608563 ~ 8608890 (-)
G98607 NA non-coding downstream 50526 8608196 ~ 8608395 (-)
G98641 NA non-coding upstream 15373 8690872 ~ 8715924 (-)
G98630 NA non-coding upstream 58577 8734076 ~ 8738396 (-)
G98660 NA non-coding upstream 78220 8753719 ~ 8758625 (-)
G98710 NA non-coding upstream 89631 8765130 ~ 8765458 (-)
G97341 NA other downstream 2499200 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3240704 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3328075 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 3735517 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 4727870 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 213334 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 261290 8925960 ~ 8945229 (-)
G98679 NA other upstream 559497 9234996 ~ 9239929 (-)
G98691 NA other upstream 580603 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 834123 9509622 ~ 9512428 (-)

Expression


Co-expression Network