CI01000018_04397198_04411105 (BOC)


Basic Information

Item Value
gene id CI01000018_04397198_04411105
gene name BOC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4396649 ~ 4411105 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04397198_04411105.mRNA
GGGTAGTGTATGGAAGATGTCTGGGATATTGGACTGGATACCCTGGGAAAGAAAGCGGAAGTTTCGAGCGCTGTGTGCCCTGGGTGCTCTGCTGTGCTGCCTGCAGGATAGTGCTGCTGTTAGAGAAACTGGGGGGCAGTGTAACCCTGCGCTGCAGCGCCCTGCCTAACCATGTCAACATCAGTTGGCGTCTAAACGGCCGGGAGCTGCCAGCTGGGGGCGATGAGGAGCTGGGAGTGCTGGTGCGGCCCGGTTCTCTCTACATCCCCTCCCTTACCAACCTCACCGTAGGCAGATACCAGTGTGTGGCCACCACCAGCGTCGGGTCCTGCGCTAGCGTGCCAGCCAACGTTACTGCAGCTAAACTGCGAGATTTTGAGCCAGATGACCAGCAGGAGATTGAGGTGGATGAAGGGAACACAGCGGTGATCGAGTGCCATCTGCCTGAGAGTCAACCTAAAGCTCAGGTCCGCTACAGTGTCAAACAGGAGTGGCTGGAGACATCTAAAGGAAATTACCTGATCATGCCATCTGGAAACCTTCAGATAGCAAATGCTACACAGGATGATGAGGGTCCTTATAAATGTGCTGCTTACAACCCTATCACCCAGGAAGTAAAAACCTCCACCTCTACCGATCGTCTTAGAATACGACGTTCAACATCTGAGGCCGCACGTATTATATATCCACCTGCATCTCGGTCCATTATGGTGAACAAAGGCCAGCGGCTTGTGCTCGAGTGTGTGGCCAGCGGCATTCCCACTCCACAGGTCACATGGGCTAAGGACGGTCTGGACTTGCGAAATCATAACAACACCCGCTTCTTACTTAGCAACTTGTTGATTGATGCGGCAAGCGAGAGTGACTCGGGCACTTACGTGTGTAACGCTGATAACGGCATTGGCTCTGCGAGATCTGCTACGGTGCTGTACGACGTGCAGGTGTTTGAGCCACCCCAGGTGCGTGTCGAGCTGCAGCAGCAAGACGTTGCATGGGGCGACACGGTGCGTTTCAGCTGTCAGGTGAGGGGCAAGCCCACTCCCACTGTGGTGTGGCTCCACAACTCTCAGCCATTGAGCCCGTCGCCACGCCATCGGGTGACTTCACAGGTGCTGCGTGTGCTCCACGTCGGGCCGCAGGATGATGGCATGTACCAGTGCATGGCGGAGAACGGCGTGGGCAGCTCACAGGCAGCCACAAGACTTCTCACTGTCCCAACAGGTAAGCTGCCCATGATTCGACCGATGAGCCCAGATAAAGTGCTGCGGGAACAGCCACCTGTGAAGCCTGTGGCCACCAGTGCAGTTCTGCCTTTCGACTGCTCTGAGGTCAGAGTCTCCCCCGCCGAAGCTCCAATCATCTCGAGTCAGCCGCGCACAGGAAGGGCCGACTACTATGAACTTACCTGGAAACCCCGTCATGATGGAGGAGCACCTGTGCTGGAGTATGTCGTCAAGTACAGAAAGGCTGGAGAATCTCCCGGAGAGTGGACCACTAACACCATTTCAGGCTCCCAGAACAAGCTGACTCTTACTAAACTGCTGCCTGCCAGCCTCTATGAAGTGGAGATGGCCGCTAAGAACTGCGCTGGATTAGGGCAGCCCGCGATGATGACTTTTAGAACAGGCAAATGGCGAAGAGGAGGACACACAGGGCCTCCAAAAACACCAGAGACGCCACCTCGTCTCACACCGCCAGAAGCTCCAGACAGACCCACTGTTTCTATGGCCACTGAGACCTCAGCCTATGTGACGTGGATCCCTCGCGGGAACCGTGGATTCCCCATCCAGTCATTCCGTGTAGAGTACAGGAAATTGAAGAAAGGCGGTGGAGAGTGGGAGGTGGCTGTAAACAATATCCCCCCCTCTCGCCTCTCAGTCGAGATAACAGGCCTGGAAAAAGGAACATCATACAAGTTCAGAGTTTTAGCCGTTAATGTTTTGGGAGAGAGTCCACCAAGCGCTCCCTCTAAAGCCTACACAGTGGTGGGCAGTGGTGCACCAAACCGACGTCCCATCGATGGGCCCTACATCACCTACAATGAAGCCATCAATGAGACAACGATCATCCTAAAATGGACGTACACACCAGTCAATAACACCCCCATTTATGGCTTCTACATCTTCTACCGACCCACCGATAGCGACAATGACAGTGACTACAAAAAGGACATAGTGGAAGACCTACAGCCTGAGACGGCTTATGACATTAAGATGCAGTGTTTCAACGAAGGGGGCGAGAGCGAGTTCGGAAATGTCGTCATTTTAGAAACTAAAGCTCGCCCTCACCAGAGGACCACACCTCCAGAGACATCATCGTCCAGACCCGACCATCCAGGAAACCCTGTTCCCAGGCCTGGTGATCTGCCTTACCTCATTGTGGGTGTGGTACTCGGAGCATTCGTTTTCATCATCGTAGCCTTCATCCCAATCTGTCTGTGGAGAGTTTGGGCCAAACAGAAACAAACTTTAGACATGCGCTTTCCAGCGTTGGCAGCTACAGTTTCTCCATGTCAGTACACCATGGTACCCCTGCAGGGATTGGCTCTGGGTCGGCCTTGTCCTGTAGACCCTCACCTGACACCTGCCCACACTGTCTACGCTCCTAAAGGAGAATATATTCCCAATGGAAAACACACTACACAGCGCCTTCCTGGACACCGGGAGGATGCTGACTATGAGTTGGAGTGTGATGCGTTGTTACCTCAGAAACTTCCCAGTCCGCAACAACATATCCACAATTACTGTAACGGGGTGTCTGGCTGCCCTGAAGAGGGATGCTGTGTGCCTGATGATTCCCCCTTGCAGGTCCTCAGATTATCGAGACCTACGCATCCATCTCAGAGTCCTGACTCCATGCAGGCCGATCACTCCCTCACTGAAGCAGTTCATTTGGATGGGGAGGTCACTGCCGACTTGCCCCTGTTAACAACAGTTGATACGGGCATAAACCGGTTGCTCCAAAATGCAGAGCAACAGGAAGTGGGAACAACACAGAACATGAAGCAGCTTGAGGAACAAGGGACAAGAGATGATCCAAAAGATGGATGAAACTGTAGAAAAAAGGGGGGGGGGAAGAGAAAATATTTATTTTTGTATAACAGATGCTATATTTATATATTTATGTATTTGTACATAGTACATTTTCTTTTAGAATGTATATATAGGTTTTTTTTATATACTATGTTAAACATATTTTGGTATGTTTGTCTGTTACCACCAGGACGTTTTTTATAAGTATGCTGTATAAATGATCCTCATGTGAGATAGGAACAACCTGACACCTCAACACCGTACATACAGTATCAGTAATAAGCTCTAGATTTTCTACTGGCAAGCATCTCTTGATGTTTGAAGTACAGCTGGTGGGAAATGTAATGCTTTTAGGGCATTATGATCCATTCATTAAGAATGTTGTAACGGGCAGTGCTTTGGGACAATTGACTGTTTAAAAACACTTTGCATCAAAAATATTTGTAGTATGTGTACTCCATATATGCATACATATTTTATGCACAGTATGTTGTATCCATTTAATAGCTTTATGGCATGTAGATGCTACTGTGAGGCTTAAACACTCAGATACACACAACAAATAAA

Function

symbol description
boc Enables identical protein binding activity. Acts upstream of or within regulation of smoothened signaling pathway and retinal ganglion cell axon guidance. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior neural keel; nervous system; neural plate; neural rod; and neural tube. Orthologous to human BOC (BOC cell adhesion associated, oncogene regulated).

GO:

id name namespace
GO:0008589 regulation of smoothened signaling pathway biological_process

KEGG:

id description
K20020 BOC; brother of CDO

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04397198_04411105.mRNA True 3599 mRNA 0.50 18 4396649 4411105

Neighbor

gene id symbol gene type direction distance location
CI01000018_04361150_04364887 ATP6V1A.L, ATP6V1AA, ATP6V1AB, ATP6V1A coding downstream 31762 4360619 ~ 4364887 (-)
CI01000018_04344907_04359005 GRAMD1C coding downstream 37644 4344091 ~ 4359005 (-)
CI01000018_04336914_04342114 NA coding downstream 54535 4336589 ~ 4342114 (-)
CI01000018_04307560_04321214 QTRTD1, QTRT2 coding downstream 74363 4306921 ~ 4322286 (-)
CI01000018_04248388_04258010 KPNA1 coding downstream 138611 4248122 ~ 4258038 (-)
CI01000018_04464837_04473051 NA coding upstream 53533 4464638 ~ 4473051 (-)
CI01000018_04491510_04539751 ATP8A2 coding upstream 80130 4491235 ~ 4539751 (-)
CI01000018_04557779_04561445 RNF6 coding upstream 146531 4557636 ~ 4561997 (-)
CI01000018_04595424_04596449 GPR12 coding upstream 183360 4594465 ~ 4597587 (-)
CI01000018_04604468_04611851 USP12.S, USP46, USP12, USP12.L, RGD1561481, USP12A, USP12-LIKE coding upstream 192682 4603787 ~ 4611851 (-)
G105277 NA non-coding downstream 110657 4285739 ~ 4285992 (-)
G105185 NA non-coding downstream 158514 4234605 ~ 4238135 (-)
G105263 NA non-coding downstream 177740 4218678 ~ 4218909 (-)
G105261 NA non-coding downstream 185391 4210897 ~ 4211258 (-)
G105259 NA non-coding downstream 189512 4206905 ~ 4207137 (-)
G105304 NA non-coding upstream 21086 4432191 ~ 4432482 (-)
G105306 NA non-coding upstream 33697 4444802 ~ 4445367 (-)
G105307 NA non-coding upstream 43156 4454261 ~ 4454478 (-)
G105213 NA non-coding upstream 173523 4584628 ~ 4587775 (-)
G105199 NA non-coding upstream 201592 4612697 ~ 4615380 (-)
G105200 NA other downstream 150639 4243467 ~ 4246010 (-)
G105104 NA other downstream 378832 4007697 ~ 4017817 (-)
G104968 NA other downstream 896135 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 1995746 2389201 ~ 2488018 (-)
G103842 NA other downstream 2436591 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 443976 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1480231 6020861 ~ 6025876 (-)
G106538 NA other upstream 2119342 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 2229507 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location