CI01000018_04491510_04539751 (ATP8A2)


Basic Information

Item Value
gene id CI01000018_04491510_04539751
gene name ATP8A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4491235 ~ 4539751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04491510_04539751.mRNA
GACCCGCGTGCTCGGCCGCCGGCTACCGCAAGGCAGAGGATGAGATGTCCGGAACCACATCACAGGCGGACCCGATAGATGCCACAGCGCGGATTGTTCTGCTCAACCGAGCCCAGACCACCAAATTTTGTGACAACCATGTCAGATCTGATGGAGCTCTGACCTTTTCTGCTCATCAGCTTTTCAGCATAATGCCTCTGACTGGAGCAGTGGAAATTTTAATAAGAATTGTTCAGATCATTCTCTTATTCCTTGATCTTCATATTTTATTTACCAACTGGTTTCTGCTTCCCATTGCATTGGCATCAATTGGTCAGCTGTCAATCACAAAGTCAGCTACCGAGCTGCTGTTTGATGCCGTAGTGTGGGTTACACTGGGTGTGTTAGGCTGTGAACTCATTGCCTATGAGCCCAGAAGGGTGTCATGTTTACAAAGTGGACCGCGCTCGCACAACACGGCTAAATACGGGATCCTTACCTTCCTGCCAAGGTTCCTGTACGAACAGATCAGGCGAGCAGCTAATGCCTTCTTCCTCTTCATCGCTCTTATGCAGCAAATCCCTGATGTCTCACCGACGGGTCGCTACACAACGCTGGTGCCCCTTATCTTTATTCTGACAGTGGCTGGGATCAAGGAGATCATTGAGGATTATAAAAGACATAAAGCAGACAATACAGTGAACAAGAAGAAGACAACAGTACTGCGTAACGGAGCATGGCAGACCATCATATGGAAGCAGGTGGCAGTGGGAGACATAGTCAAGGTGACCAATGGGCAGCATCTCCCAGCTGACATGGTCATAGTGTCCTCCAGTGAACCTCAGGCGATGTGCTATACTGAAACATCCAACTTAGATGGCGAGACCAACCTAAAGATCCGACAGGGTCTCTCACTCACAGCTAGTTTTCAGTCTCTGGAGGAACTGATAGCTTTGTCTGGTCGTCTTGAATGTGAGGGGCCAAACAGACACTTGTACGACTTCACTGGAACACTGCGCTTAGACAACCTCAACCCAGCTCCACTTGGGCCGGACCAGGTGCTGTTACGAGGTGCCCAGCTCAGGAACACGCAGTGGGTTGTGGGAATTGTAGTCTACACTGGACATGATTCCAAACTCATGCAGAATTCCACTAAAGCTCCACTGAAACGCTCTAATGTGGAGCGTGTGACAAACATGCAGATCCTGGTTCTGTTCGGGATTCTCCTGGTCATGGCGCTGGTCAGCTCCATCGGGGCCGCCATATGGAACAAACAGCACACGGATGTGGATTGCTGGTACCTTTCCCGTGCAGGTGACATCTCCCTGAACTTCTGGTACAATCTGCTGACCTTCATCATCCTCTATAACAACCTGATTCCCATCAGCCTTCTGGTCACTCTAGAAGTGGTCAAATTCACACAGGCTCTCTTCATTAACTGGGATGTTGAGATGTATTATGCTGAGACAGACACTCCTGCTATGGCCCGAACGTCCAATCTGAATGAAGAACTAGGCCAAGTAAAATATCTATTTTCAGATAAGACCGGCACTCTCACCTGCAACATCATGCACTTTAAGAAGTGCACGATAGCTGGAATTACATACGGGCACTTCCCAGACCTGGACTGCGATCGATCCATGGAGGACTTCAGTCACCTTCCCTCTACAAGTCATAATTCTACTGAGTTTGATGATCCTGCTCTTATCCAGAACATTGAGAAGAACCATCCCACATGCCCTCAGATTTGTGAGTTTTTGACCATGATGGCTGTTTGTCATACTGTTGTTCCTGAGCGAGAAGGAGACCAAATTATCTTCCAGGCTTCCTCACCAGATGAAGGAGCGCTGGTTAAAGGTGCCAAGAGTCTGGGCTTTGTTTTTACTGCACGAACACCACATTCAGTCATCATAGAGGCGAGAGGAAAAGAGCAGACATATGAGCTTCTTAATGTACTAGAATTTTCCAGCAATCGCAAACGGATGTCAGTGATTGTCAGAACACCTACGGGCAAACTTAGACTTTATTGCAAGGGAGCGGACAATGTGATCTTTGAGCGTCTGAATGAGACGTCACAGTATAAGGACCTAACTTTGGTCCATCTGGAGCAGTTTGCCACAGAAGGGCTGCGGACACTTTGTTTTGCATATGTGGACCTTGAGGAGGGGGCGTATCAGGAATGGCTGAAGGAGTACAATCGTGTCAGCACTGTGCTAAAGGATAGGGCGCAGAAACTGGAGGAATGCTACGAACTCATTGAGAAGAACTTGCTGTTGCTAGGTGCCACTGCGATAGAAGACCGGCTGCAAGCGGGAGTCCCGGAAACCATAGCAACGCTCATGAAAGCCGACATCAAGATCTGGGTTCTGACTGGAGACAAGCAGGAGACGGCCATCAATATCGGTTACTCCTGTAAGCTGGTGTCACATGGCATGTCCCTCATCATCGTCAATGAAGATTCCCTGGATGCTACCAGGGCCACACTAACAGCTCATTGCTCCTCGTTGGGTGACTCTCTGAGGAAGGAGAATGAGTTGGCGCTCATCATAGACGGACAGACACTCAAATACGCCCTCTCTTTTGAAGTGCGTCAGGCCTTCCTCGACCTTGCGCTGTCTTGCAAGGCTGTCATATGCTGCAGGGTGTCTCCGCTGCAGAAGTCAGAGATTGTGGACATGGTGAAGAAGCACGTGAAGGCCATCACGCTAGCTATCGGAGACGGAGCCAACGATGTGGGCATGATACAGACGGCACACGTGGGAGTGGGCATAAGCGGGAATGAGGGCATGCAGGCCACCAACTCATCTGACTACTCTATAGCTCAGTTCTCATACCTGGAGAAGCTTTTACTGGTTCACGGGGCTTGGAGTTACAACCGGGTCACCAAATGTATCCTGTACTGTTTCTATAAGAATGTGGTTCTGTACATCATAGAGCTTTGGTTTGCGTTTGTAAATGGTTTCTCTGGACAGATCTTGTTTGAACGGTGGTGCATTGGCCTGTACAATGTGATCTTTACTGCTCTCCCTCCTTTCACGCTGGGGATAGTTGACCGGCCATGCAGTCAGCAGAACATGCTACGATTCCCTCAGCTCTACCGCATCACACAGAATGCAGAAGGTTTTAACACTAAGACACTCCCTTTGACAACGGCAACAGTGTCGACTACCTGTTCGTGGGGAACATCGTCTACACGTAAGTCACTTGAGGCGATAGTAAGTCGATGCCTGTGTGAAAGCCCTCATCTGGTTTTGTGTGTTGAAGCTGTTTTCTCATCTGGCTGTATGGGGCAGCATGGTGCTCTGGATGTTGTTTTTTGCTGTCTATTCTGCAATCTGGCCGACCATTCCTATAGCACCGGATATGTTGGGCCAGACCGGCGCCTGGATGATTTGCTCTCTGGGTGTTCCGTATCAGATTTATGGCCCGTCGTCCCATTTCGCAGTCTCCCTGCACCTGCCACACGGTCACCCGAGCCCCAGGCTTTTACGGCCTACTCTGGAAGTGTTGACTTAAGCGGAAGTAGCTCATTAGGGTGGAAAAAGACACTTCTAATTTGGGCCATTAAACAGACAGCGGGGAAGAAGAGCAAACAGCAGATGGCAACGGTAGGCTGGCAGGGTAATGCAGTGCTGGAGCTTCTGGCTGGGCCTGATACTGGTGCCAACAGCATGTTTACTCAAAGATGTGGCATGGAATGCAGGACGACGCACAGTGAGGAAGACTTTGCTAGAGGAAGTGCAGGAACTGGAAGCTCGAGCTGTGGACCCAAGGGCAGCCGTCCTCAGAGATGCCAGCGGCCGCAGAGCAGCCAAATGAATGCCACGTCCTTCCCAACGATAACAGTGCAAACGGTCCCCTTTGTAGAGCAATATGAGTTTGAGCTGTAACCTTGAGAAGTTTGGCCCTCATCCATAACAACTGGTTTTCGGATCACTCTTTCTTTTTGGATGAGGGGAAAGATCGCTTTCATCTGATTTACAGGGAAACATCAGACTGATTTGTTTTACATTGAACGTGTTTATCAAAGATGGGGTCAGGATTATTCGATTCGTCTTCATTTCAAAACTGGCCGCAAAATGGCATCAGTTTCCAGAATTGAAATTTTGCCATTTAATTTAGCAACCAGAGACTTTTTTATTGGCTACATTAATTTTAGAATAAA

Function

symbol description
atp8a2 Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in neuron development and phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in cerebellar ataxia, mental retardation and dysequlibrium syndrome. Orthologous to human ATP8A2 (ATPase phospholipid transporting 8A2).

GO:

id name namespace
GO:0048194 Golgi vesicle budding biological_process

KEGG:

id description
K14802 DRS2, ATP8A; phospholipid-transporting ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04491510_04539751.mRNA True 4144 mRNA 0.49 38 4491235 4539751

Neighbor

gene id symbol gene type direction distance location
CI01000018_04464837_04473051 NA coding downstream 18184 4464638 ~ 4473051 (-)
CI01000018_04397198_04411105 BOC coding downstream 80130 4396649 ~ 4411105 (-)
CI01000018_04361150_04364887 ATP6V1A.L, ATP6V1AA, ATP6V1AB, ATP6V1A coding downstream 126348 4360619 ~ 4364887 (-)
CI01000018_04344907_04359005 GRAMD1C coding downstream 132230 4344091 ~ 4359005 (-)
CI01000018_04336914_04342114 NA coding downstream 149121 4336589 ~ 4342114 (-)
CI01000018_04557779_04561445 RNF6 coding upstream 17885 4557636 ~ 4561997 (-)
CI01000018_04595424_04596449 GPR12 coding upstream 54714 4594465 ~ 4597587 (-)
CI01000018_04604468_04611851 USP12.S, USP46, USP12, USP12.L, RGD1561481, USP12A, USP12-LIKE coding upstream 64036 4603787 ~ 4611851 (-)
CI01000018_04627321_04645724 LNX2A, LNX2 coding upstream 87418 4627169 ~ 4646182 (-)
CI01000018_04657706_04674073 NA coding upstream 117820 4657571 ~ 4674073 (-)
G105307 NA non-coding downstream 36757 4454261 ~ 4454478 (-)
G105306 NA non-coding downstream 45868 4444802 ~ 4445367 (-)
G105304 NA non-coding downstream 58753 4432191 ~ 4432482 (-)
G105277 NA non-coding downstream 205243 4285739 ~ 4285992 (-)
G105185 NA non-coding downstream 253100 4234605 ~ 4238135 (-)
G105213 NA non-coding upstream 44877 4584628 ~ 4587775 (-)
G105199 NA non-coding upstream 72946 4612697 ~ 4615380 (-)
G105328 NA non-coding upstream 81600 4621351 ~ 4621628 (-)
G105209 NA non-coding upstream 110130 4649881 ~ 4651347 (-)
G105336 NA non-coding upstream 201910 4741661 ~ 4741921 (-)
G105200 NA other downstream 245225 4243467 ~ 4246010 (-)
G105104 NA other downstream 473418 4007697 ~ 4017817 (-)
G104968 NA other downstream 990721 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 2090332 2389201 ~ 2488018 (-)
G103842 NA other downstream 2531177 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 315330 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1351585 6020861 ~ 6025876 (-)
G106538 NA other upstream 1990696 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 2100861 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location