CI01000018_04604468_04611851 (USP12.S, USP46, USP12, USP12.L, RGD1561481, USP12A, USP12-LIKE)


Basic Information

Item Value
gene id CI01000018_04604468_04611851
gene name USP12.S, USP46, USP12, USP12.L, RGD1561481, USP12A, USP12-LIKE
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4603787 ~ 4611851 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04604468_04611851.mRNA
TCGCTGCTGGGGCACTAAGACCCCGCGAAATTCCCTCTGGCAGGAACGCAGTCTGTCCTCACGGGGACTCCTTTTCGCCTCCGCGCGGTGATTGGGTGGAAGATGGCGCTGGGCGAATGGAAATCCTAATGACAGTTTCCAAATTTGCCTCTTTTTGTACCATGGGCGCCAATGCCTCCGCTTTGGAGAAAGAGATTGGCTCGGAGCAGTTCCCTGTCAACGAGCATTACTTCGGATTGGTTAACTTTGGAAACACCTGCTACTGTAACTCTGTGCTCCAGGCTCTGTACTTCTGCCGGCCGTTCCGGGAGAAGATCCTCGCGTACAGGAGCCAGCCGCGCCGCAAGGAGAACCTGCTCACCTGCCTGGCCGACCTGTTCCACAGTATAGCCAACCAGAAGAGGAAAGTTGGCGTGATACCCCCGAAAAAGTTCATTACTCGACTACGAAAAGAGAATGAACTGTTTGATAACTACATGCAACAAGATGCACATGAGTTTCTCAACTACCTGCTGAACACTATAGCAGACCTGCTACAAGAAGAGCGCAAGCAAGACAAACAGAATGGCAAACTGGCCAATGGCACACTTGACTCCCAGAACAATAACAGCACCCCGCCCTCCTCAACCTGGGTTCATGAGATCTTCCAGGGCACGTTGACAAATGAGACACGATGCCTCACCTGCGAGACGATAAGCAGTAAAGATGAGGATTTCTTGGATTTGTCAGTGGACGTGGAGCAGAACACTTCGATCACACACTGTCTCAGAGGTTTCAGTAATACAGAGACCTTGTGCAGTGAGTATAAATATTACTGTGAGGAATGCAGAAGTAAACAGGAGGCACACAAAAGAATGCGGGTTAAGAAACTTCCCATGATCCTCGCCTTGCACTTGAAGAGATTTAAATACATGGAGCAGCTGCAGCGCTACACTAAGCTAAGCTACCGTGTGGTCTTCCCTCTGGAGCTCCGCCTCTTTAACACCTCTGGCGATGCCACCAATCCCGAGAGGCTTTACGACCTGGTCGCTGTGGTGGTGCATTGTGGCAGCGGTCCAAACCGAGGACACTACATCGCAATTGTAAAGAGTCATGATTTCTGGCTACTGTTCGATGATGACATCGTAGAGAAAATCGATGCCCAGGCGATTGAAGAATTCTATGGATTAACCTCTGAAATTTCCAAGAACTCTGAGTCCGGGTACATCCTGTTTTACCAGTCCAGAGACTGAGAGAGGCCTGAGCGGCGTCCCCTTACGGACACCTGTGCAGCAGGCGTGCCTGTTTGCAGAAACCCTGCTCCATCCCACCTGTGCAGGTTCTCACTGCAGCGGCGCCTCACACACACACACACACCCCACCCCACCCGTCCAAGCCCTCCCTCGCCAGTCTCCACGCAGCAGTAACGTTGGACGCGATGCAGTCGCAAGGCCTTTTGAACGTCGTTTGTCAGTTGTATTTACGTTTTAGGAGCGTTTCATCACTCGTGTTCAGTCCTTTACTGTGGAGAGAATGTGTTTAATGTAACAGACTGTATGATATGACGGGGATTTGCATTCAACTTTCATGCTGCGACCTTTTGATTCCTGTGGCTGTGAGGAGGCTGAAGACTTGTGCATGGGGAAAGCGGGTGTGTTTATTATAATGGCGGGGAGGGTCTAAACGCTCCGGATACGGGGCATTTCGGGTTATGTATTTCTACCTTGTACAGAGTGATATTTGTATAAATAATATGAGAATTATAATAATATTACTGATATAGCCAAAAAATGAGAATAGAACCATAAAAGATGTATAACACTATGGTGCACTTTTGATACAGTTTTGTAGATGTTGGAAGGTTAATGTGAGGGTTTGCTTGAGACGGCCTGTTGTGAAATTATCATTTTCTGTTTTAAAGAAAAAGAAATAAA

Function

symbol description
usp12a Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP12 (ubiquitin specific peptidase 12).
usp46 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination and regulation of GABAergic synaptic transmission. Predicted to act upstream of or within protein phosphopantetheinylation and proteolysis. Orthologous to human USP46 (ubiquitin specific peptidase 46).
usp12 Enables cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Involved in protein deubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nucleus.
rgd1561481 Predicted to be involved in ubiquitin-dependent protein catabolic process.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04604468_04611851.mRNA True 1913 mRNA 0.48 9 4603787 4611851

Neighbor

gene id symbol gene type direction distance location
CI01000018_04595424_04596449 GPR12 coding downstream 6200 4594465 ~ 4597587 (-)
CI01000018_04557779_04561445 RNF6 coding downstream 41790 4557636 ~ 4561997 (-)
CI01000018_04491510_04539751 ATP8A2 coding downstream 64036 4491235 ~ 4539751 (-)
CI01000018_04464837_04473051 NA coding downstream 130736 4464638 ~ 4473051 (-)
CI01000018_04397198_04411105 BOC coding downstream 192682 4396649 ~ 4411105 (-)
CI01000018_04627321_04645724 LNX2A, LNX2 coding upstream 15318 4627169 ~ 4646182 (-)
CI01000018_04657706_04674073 NA coding upstream 45720 4657571 ~ 4674073 (-)
CI01000018_04738374_04757471 NA coding upstream 126429 4738280 ~ 4757471 (-)
CI01000018_04759598_04770734 TMPRSS7 coding upstream 147658 4759509 ~ 4770734 (-)
CI01000018_04773554_04792048 SPATA13 coding upstream 161375 4773226 ~ 4792048 (-)
G105213 NA non-coding downstream 16012 4584628 ~ 4587775 (-)
G105307 NA non-coding downstream 149309 4454261 ~ 4454478 (-)
G105306 NA non-coding downstream 158420 4444802 ~ 4445367 (-)
G105304 NA non-coding downstream 171305 4432191 ~ 4432482 (-)
G105277 NA non-coding downstream 317795 4285739 ~ 4285992 (-)
G105199 NA non-coding upstream 846 4612697 ~ 4615380 (-)
G105328 NA non-coding upstream 9500 4621351 ~ 4621628 (-)
G105209 NA non-coding upstream 38030 4649881 ~ 4651347 (-)
G105336 NA non-coding upstream 129810 4741661 ~ 4741921 (-)
G105350 NA non-coding upstream 155760 4767611 ~ 4768386 (-)
G105200 NA other downstream 357777 4243467 ~ 4246010 (-)
G105104 NA other downstream 585970 4007697 ~ 4017817 (-)
G104968 NA other downstream 1103273 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 2202884 2389201 ~ 2488018 (-)
G103842 NA other downstream 2643729 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 243230 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1279485 6020861 ~ 6025876 (-)
G106538 NA other upstream 1918596 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 2028761 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location