CI01000018_04627321_04645724 (LNX2A, LNX2)


Basic Information

Item Value
gene id CI01000018_04627321_04645724
gene name LNX2A, LNX2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4627169 ~ 4646182 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04627321_04645724.mRNA
ACCCCGGTATTTACGAACAAGTGTTATCCGTTCAGATCTTATACAGTGTCTATTTTTTGTCTTCTTCTCTTGCCCCTCCTCTTCTCACTTTCACATCAAAACCTCTTGACTCTCTGCTCCCTGCTGCAATCCTAGATAATTCTCTCTCTGCGGGATTGAAAGATTGCTCCGGGCGAGAGAGCAAGAGATTACACTGTCAGATTAATGTGCAGGAGTAAACCCACACTGCTCTGCAACATAATCTCATCCTCACAACACATGGCACACACACAAACACTTTATCTCATTCACAACAGTTACCTCACTTCTTCTCTTCGACCCTTCAGAGTGATGTCACACCGTCTACCAGGGGGTGGCCGTCCCCTGCCGGAGTCACACAGCCTCTGACGCCCATGGGACGGACGCCCCCGTATCCAAGATACTGAGTGCGTGTGTGTGTGTAGCCGAAGCCGAGTGCAATGGGCAGTCTGGGAGAGGGAGTGGACCCGGGCATGGTGAGCGAAGCTCTACTGGAGGCCCTTTGCTCTGAATGTGGACAGATTCACCGCGCCTGGGAGAACCACCTTTATAACTATCGTTTGGAAGTGGACGATGATTTGGTGTGCCACATCTGCCTTCAGCCGTTAGTTCAGCCCTTGGATACACCATGTGGCCACACCTTCTGTGCCCGCTGCCTGCGCAGCTTCCTGCAGGAACGGGACTTTTGTCCGCTGGACCGTGCGCATCTACAGCTGCAGGTCTGCCGGCGCTCCAGCATTCTGGTGCACAAGCTGCTGGATAAGTTGTCGGTCACCTGTCCTCTCACGCCCTCCTGTTCTCTCAGCATGCCACGCTGTGACCTGGAGGCACATCTCAAACACAGCAGCAGTTTCATATTCTCTTCAGCCATGCTGGGAAACTTCAACTCTAGAAACCTTTTCAACCACTTCTTCTGTGAGACTGCCAAGGGCAACCCAGAGCTATGGTGTCCTGGGACACAGAGTCAGCGAACAAAGCTGGATCGGACGCGGATGGAGGGAGGCGAAGACAGGGTCATGGCGACCAATCCCCCCAAATCCCCCCAGACTGAGACGAAGGAGAGTACACCATCACCACCTGCTGGATCCAACGCATGCAACAATGTTCCTACATGGACAGAAGAGCCCGGCGTAGACAACCCCGCCTTCGAAGAAAGCACGGAAGAAGACAGTGTCCATGGTCTTGAGTGTGCTCTTCCACGTGTGAAGCGTCCTCTCAGCAACCCGTGCATCCATCTTCTCCGTACTGGTAGTTCAGCCTCTTCGGGATGGGACTTTGTTGAAACATTGCCTCTTTCTGCTGAAGAAGGTTGTGTGAAACTTCCGTCTCTACCTGAGGGAGAAATCACAACTATTGAGGTTCATCGTGCAAACCCCTACACAGAGCTGGGCATAAGTATTGTTGGTGGAAACGAGACCCCCCTGATAAATGTGGTAATACAGGAGGTGTACCGTGATGGTGTTATAGCCCGAGACGGAAGGCTGCTGGCTGGAGACCAAATACTTCAGGTGAACAACGTAGACATCAGTAATGTGCCCCATAACTTCGCTCGCTCTACACTGGCACGTCCCTGCGCCACTCTGCAGTTGACGGTTTTGAGAGAACGCCGCTGTTCTGCCAGGCCACCTGTGGCAACTGCTACGCCCAAGGGCAGCCCTGCCAGCATACGCATCACCTTGCACAAGCGGGAATCATCAGAGCAGCTGGGGATCAAGCTGGTGCGGCGTACAGATGAAGCGGGTGTGTTTATCCTGGACTTGCTGGAGGGAGGGTTAGCAGCTAAAGATGGACGACTTTGCAGCAACGACAGAGTGCTGGCCGTCAACGAGCATGACCTGAGACACGGCACGCCTGAGCAGGCAGCTCAGATTATACAGGCTAGTGGAGAAAGAGTCAATCTGATGATTAGCCGGTCCAGCAAGCAGACTATGGCCGTGCACACAGGCTCCACCTTGACCAGGGACATTTGGAGCCATGAACACATCCCGCCGCTTCCCTGCACTGCGACCCCAAGCCCTGTCCCAAGTCTGCACCTTGCCAGGTCTTCCACCCAGAGAGACCTCTCCCAGTGTGTGACCTGTAAGGAGAAACACATCACTGTGAAGAAGGAACCTCACGAGTCTCTGGGTATGACTGTGGCAGGGGGACGGGGCAGCAAGAGTGGAGAGCTGCCGATCTTTGTGACGAGCGTCCAGCCCCATGGCTGCCTGTCACGTGATGGACGAATCAAACGTGGGGATGTACTGTTGAGTATTAATGGTCAGGATTTGACCTACCTGAGCCACAGCGAGGCAGTTGGCACTCTAAAGTCCAGCGCTGCGTCCTGCTCTGTCCAACTGAAGGCACTAGAGGTTAACACAGTTGAAGAACCAGGCCTGGATGAAGAGCTTCTCCCTCCGCACGAAAACGACTACGATGCAAGCTGGTCGCCATCATGGGTGATGTGGCTTGGACTTCCCAGCTACCTGCATAGCAGTCATGAGATTGTCCTCCGCAGAAGTCACCCTGGCAGCTGGGGTTTCAGCATTGTTGGAGGTTATGAGGAGAACCACAGCAACCAGGCGTTTTTTATCAAGACTATCGTCCTTGGAACACCCGCTTACTACGATGGCCGTCTAAAGTGTGGCGACATGATAGTGGCGGTAAACTGTCTGTCCACGGCTGGCATGAGTCATTCCGCCCTGGTGCCCATGCTGAAGGAGCAGCGGAGCAGAGTGGCGCTTACCGTCGTGTCATGGCCAGGAAGTCTGATCTAACCCCACCAGGGCACCATGCCTCACCTCAGACAGCGCTCATATCTGTGTTCTAATGGTCCTATGTGTTCTACTCTCTGCCACGGAGGCACCATACTGTCAAAGCCAGAGTCTCGGAAAATTGAATGCTTTTACTGTACTTGATGCTGAATAAA

Function

symbol description
lnx2a Enables ubiquitin protein ligase activity. Acts upstream of or within exocrine pancreas development and protein phosphopantetheinylation. Is expressed in central nervous system; endoderm; and pancreatic system. Orthologous to human LNX2 (ligand of numb-protein X 2).
lnx2 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination.

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process

KEGG:

id description
K10692 LNX1_2; ligand of Numb protein X 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04627321_04645724.mRNA True 2926 mRNA 0.54 11 4627169 4646182

Neighbor

gene id symbol gene type direction distance location
CI01000018_04604468_04611851 USP12.S, USP46, USP12, USP12.L, RGD1561481, USP12A, USP12-LIKE coding downstream 15318 4603787 ~ 4611851 (-)
CI01000018_04595424_04596449 GPR12 coding downstream 29582 4594465 ~ 4597587 (-)
CI01000018_04557779_04561445 RNF6 coding downstream 65172 4557636 ~ 4561997 (-)
CI01000018_04491510_04539751 ATP8A2 coding downstream 87418 4491235 ~ 4539751 (-)
CI01000018_04464837_04473051 NA coding downstream 154118 4464638 ~ 4473051 (-)
CI01000018_04657706_04674073 NA coding upstream 11389 4657571 ~ 4674073 (-)
CI01000018_04738374_04757471 NA coding upstream 92098 4738280 ~ 4757471 (-)
CI01000018_04759598_04770734 TMPRSS7 coding upstream 113327 4759509 ~ 4770734 (-)
CI01000018_04773554_04792048 SPATA13 coding upstream 127044 4773226 ~ 4792048 (-)
CI01000018_04798056_04800698 C1QTNF9 coding upstream 151796 4797978 ~ 4800698 (-)
G105328 NA non-coding downstream 5541 4621351 ~ 4621628 (-)
G105199 NA non-coding downstream 11789 4612697 ~ 4615380 (-)
G105213 NA non-coding downstream 39394 4584628 ~ 4587775 (-)
G105307 NA non-coding downstream 172691 4454261 ~ 4454478 (-)
G105306 NA non-coding downstream 181802 4444802 ~ 4445367 (-)
G105209 NA non-coding upstream 3699 4649881 ~ 4651347 (-)
G105336 NA non-coding upstream 95479 4741661 ~ 4741921 (-)
G105350 NA non-coding upstream 121429 4767611 ~ 4768386 (-)
G105413 NA non-coding upstream 612130 5258312 ~ 5258511 (-)
G105219 NA non-coding upstream 636524 5282706 ~ 5284386 (-)
G105200 NA other downstream 381159 4243467 ~ 4246010 (-)
G105104 NA other downstream 609352 4007697 ~ 4017817 (-)
G104968 NA other downstream 1126655 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 2226266 2389201 ~ 2488018 (-)
G103842 NA other downstream 2667111 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 208899 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1245154 6020861 ~ 6025876 (-)
G106538 NA other upstream 1884265 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 1994430 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location