CI01000018_04803745_04804788 (TAGLN3B, TAGLN3)


Basic Information

Item Value
gene id CI01000018_04803745_04804788
gene name TAGLN3B, TAGLN3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4803117 ~ 4804796 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04803745_04804788.mRNA
AGTGACCAATGGCGAACCGAGGACCCAGTTATGGACTGAGCCGTGAGGTGCAGGAGAAGATCGAGCAGAAATATGACCCAGAGCTGGAATCTCGACTGGTGGACTGGATTGTCGCTCAGTGTGGAGGAAATGTTGAAAAACCACAGCCAGGGAAACAAAACTTCCAGACCTGGCTAATGGATGGCACTATCCTCTGTAGACTCATTAACAGTTTGTATCCGCGTGGTAAGGAGCCTATTAAGAAGATCCCAGAGACACAGATGGCCTTTAAGCAGATGGAAAAGATCTCCCAGTTCCTTCAGGCAGCTGAAGCCTATGGAGTAATCACCACAGACATTTTTCAGACAGTAGACTTGTGGGAAGGAAAAGACATGGCAGCCGTCCAGAGAACTCTAATGGCGCTTGGTAGCGTGGCTCTCACAAAAGACGATGGACATTACCGAGGTAACCGGGACTGGTTTCACAGGAAATCTCAAGGCAACCGTCGAGAGTTTTCTGAGGAGCAGTTGAGGCAGGGTCAGAATCTGATTGGCTTACAGATGGGCAGTAACCGTGGGGCATCTCAGGCTGGCATGACTGGTTACGGCATGCATCGGCAGATTATGTGAAGCTATACGAGTGCCAGGCAACCTGCCTAAAACACCCAGAAGACCTTAAACCCCCCTCACCCCTACCCTTACCAAGCAGTGTTCCTTGATGGTGGCATCTATTTGATGAAGAATAGCAGTCTTAAGCGGTTTTAAGACATTAGAGCATGCTAGATATATCTATTTTATGATTGGTTTGCTCAGCTTGTGATCAAATTTATTTATTTATTTAATGTATGCAAATAGTGATAGTAATTCTTAAAGTTTTATCTAAGCAAGTCAAAACAACTGCCTTATTCTCTATGAGCAAACAGTGTTGATATACCAAATAACAGACAGCAACTGTAGCAGTTTACTAGTTTACATAGTGTTTGAATGTACAGTAAGGGACAAAAGTTTGCCCTTGTGGATACTGTATTGCACCTGTTGTTATTGTGATCCACTCTTTTGCTGTTTTAATAGCAAAAAAGAACAATTAAGAATGTCAATTCACATACTAACCAGAAGTACTGTATGCAGATTAATAAGAGTCATAAATGTATAAATATGTTTGTTTGTGTTGTCCGTTGTTGTTGTGTGTGACCATTCCATGTCAGTTTCATAATAAGCTTGGTTTTGGTGACCATGTTTGATCCAAATGTTTAATAAA

Function

symbol description
tagln3b Predicted to be active in cytoskeleton. Is expressed in several structures, including nervous system; pigment cell; pronephric duct; tail bud; and trigeminal placode. Orthologous to several human genes including TAGLN3 (transgelin 3).
tagln3 Predicted to be involved in central nervous system development. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in cytoskeleton.

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process

KEGG:

id description
K20526 TAGLN; transgelin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04803745_04804788.mRNA True 1236 mRNA 0.42 4 4803117 4804796

Neighbor

gene id symbol gene type direction distance location
CI01000018_04798056_04800698 C1QTNF9 coding downstream 2419 4797978 ~ 4800698 (-)
CI01000018_04773554_04792048 SPATA13 coding downstream 11069 4773226 ~ 4792048 (-)
CI01000018_04759598_04770734 TMPRSS7 coding downstream 32383 4759509 ~ 4770734 (-)
CI01000018_04738374_04757471 NA coding downstream 45646 4738280 ~ 4757471 (-)
CI01000018_04657706_04674073 NA coding downstream 129044 4657571 ~ 4674073 (-)
CI01000018_04807843_04810778 ABHD10B, ABHD10 coding upstream 2770 4807566 ~ 4810778 (-)
CI01000018_04811791_04814940 ACOT9.2, ACOT9.1, ACOT9 coding upstream 6842 4811638 ~ 4816478 (-)
CI01000018_04817413_04821724 ACOT9.1 coding upstream 12107 4816903 ~ 4821724 (-)
CI01000018_04825678_04826167 NA coding upstream 20645 4825441 ~ 4826167 (-)
CI01000018_04827973_04829957 NA coding upstream 23177 4827973 ~ 4829957 (-)
G105350 NA non-coding downstream 34731 4767611 ~ 4768386 (-)
G105336 NA non-coding downstream 61196 4741661 ~ 4741921 (-)
G105209 NA non-coding downstream 151770 4649881 ~ 4651347 (-)
G105328 NA non-coding downstream 181489 4621351 ~ 4621628 (-)
G105199 NA non-coding downstream 187737 4612697 ~ 4615380 (-)
G105413 NA non-coding upstream 453516 5258312 ~ 5258511 (-)
G105219 NA non-coding upstream 477910 5282706 ~ 5284386 (-)
G105464 NA non-coding upstream 560254 5365050 ~ 5489735 (-)
G105526 NA non-coding upstream 689040 5493836 ~ 5494106 (-)
G105939 NA non-coding upstream 861057 5665853 ~ 5666088 (-)
G105200 NA other downstream 557107 4243467 ~ 4246010 (-)
G105104 NA other downstream 785300 4007697 ~ 4017817 (-)
G104968 NA other downstream 1302603 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 2402214 2389201 ~ 2488018 (-)
G103842 NA other downstream 2843059 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 50285 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1086540 6020861 ~ 6025876 (-)
G106538 NA other upstream 1725651 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 1835816 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location