CI01000018_05222497_05243379 (ZC2HC1A)


Basic Information

Item Value
gene id CI01000018_05222497_05243379
gene name ZC2HC1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 5222497 ~ 5243379 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_05222497_05243379.mRNA
TCTTCAGAATCTCCTCCCGTTTCTGAAGACCTGGTGCCCTGCAAAATATGTGGAAGAAGATTCTTTTCAAGGGTGCTTAAAAAACATGTGCCGATCTGCCAGAAGACAGTGGCAAAGAGAAGGAAGGTGTTTGACTCCAGCAGGCAAAGGGCAGAGGGGACCGATATTTCTACAGTCAAACCCATAAAACCAAAGTTACAAAGTTCTTCCAGCAGCTCTAAGTCTGATAAACCGGAACCACCCAAGAAACAGTCCAATTGGCGCAGAAAGCATGAAGAATTCATTGCTACCATTCGCGCAGCCAAAGGCTTAAATCAAGTCATGAAAGATGGTGGACCCCTTCCTCCACCCCCTCCTCCATCCTATGATCCAGATTATATCCAGTGTCCCTATTGCCAGCGACGCTTCAGTGAGAATGCAGCAGATCGCCACATCAAGTTCTGTAAGGAGCAAGCATCCAGAATCTCCAACAAGAGCAAGCTTCCTGGAAGTGATAAAGCCAAACCCCCAACCAGGACTCAGTACAAACCTCCTCCACCAAAGAAGGCAAACTCTCCTGCTGTATCCACCGTGTCCTCTCGTCTACCTCAGCGCTCAGCCTATGGGCAGGGTGCTGGCACAGGGATTCCTAGCAGCAAAACCTCATCCACTGGCTCAGTGAGGAGCGTATCATCAGGATATTCTCCGTTACGGAACACCTCATCCGACTTGACCAGCCCTCCCTCGGAAGGGAACATGAAACCCAAGGGAATGGTTTTGCAAAGCTCCCTGAGAAGTCCGCCTTCTGGTATAGGGATAAACAAGAAGAAGGTCCAAAATGCAGATAGCTGTATTTCAAGGAACGATGTGAAAAACGAGAATGAAAACAATTACTCCACAACAGGCACCAAGTTTTGCCATGAGTGTGGGACCAAGTACCCCGTGGACTGGGCCAAGTTTTGCTGTGAGTGTGGAGTGAAACGAATGTACATT

Function

symbol description
zc2hc1a Predicted to enable metal ion binding activity. Orthologous to human ZC2HC1A (zinc finger C2HC-type containing 1A).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_05222497_05243379.mRNA True 972 mRNA 0.49 9 5222497 5243379

Neighbor

gene id symbol gene type direction distance location
CI01000018_05163296_05172812 NA coding downstream 49685 5163027 ~ 5172812 (-)
CI01000018_05037255_05110400 CTNND2A coding downstream 112097 5037255 ~ 5110400 (-)
CI01000018_05008490_05017148 NA coding downstream 204055 5008409 ~ 5018442 (-)
CI01000018_04887828_04984375 CTNND2 coding downstream 238097 4886972 ~ 4984400 (-)
CI01000018_04856240_04875704 DAP coding downstream 345965 4855081 ~ 4876532 (-)
CI01000018_05412935_05458370 NA coding upstream 169331 5412710 ~ 5458442 (-)
CI01000018_05472889_05494284 NA coding upstream 229272 5472651 ~ 5495370 (-)
CI01000018_05528561_05576788 ZFHX4 coding upstream 285182 5528561 ~ 5576788 (-)
CI01000018_05588289_05597432 NA coding upstream 344580 5587959 ~ 5597822 (-)
CI01000018_05667742_05668807 NA coding upstream 424240 5667619 ~ 5669240 (-)
G105350 NA non-coding downstream 454111 4767611 ~ 4768386 (-)
G105336 NA non-coding downstream 480576 4741661 ~ 4741921 (-)
G105209 NA non-coding downstream 571150 4649881 ~ 4651347 (-)
G105328 NA non-coding downstream 600869 4621351 ~ 4621628 (-)
G105199 NA non-coding downstream 607117 4612697 ~ 4615380 (-)
G105413 NA non-coding upstream 14933 5258312 ~ 5258511 (-)
G105219 NA non-coding upstream 39327 5282706 ~ 5284386 (-)
G105464 NA non-coding upstream 121671 5365050 ~ 5489735 (-)
G105526 NA non-coding upstream 250457 5493836 ~ 5494106 (-)
G105939 NA non-coding upstream 422474 5665853 ~ 5666088 (-)
G105200 NA other downstream 976487 4243467 ~ 4246010 (-)
G105104 NA other downstream 1204680 4007697 ~ 4017817 (-)
G104968 NA other downstream 1721983 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 2821594 2389201 ~ 2488018 (-)
CI01000018_06021105_06025859 NA other upstream 647957 6020861 ~ 6025876 (-)
G106538 NA other upstream 1287068 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 1397233 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location