CI01000018_05803227_05816159 (HNF4G)


Basic Information

Item Value
gene id CI01000018_05803227_05816159
gene name HNF4G
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 5802909 ~ 5816493 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_05803227_05816159.mRNA
ATTTTTTGGTTATTTGATGGTGCATTACTTTGTAAGACTGTCATTTTGCCTGAGAATAGGGCCTGTTGGTTGGGCTGCACCAATAAAACCTCTGGTTCCTTTTCTGGAGCAAATGGGGAATACTGTTATCTCTTCATCCTTCTGATAAGTATAGGATAAGGGGAGAAGATAAGTTCTGTGCAAGGAGGTGAGGAGTCTTGGCCAAGGCTCCTCCCTTGTCTTAGAAGATGACAAATCAGCATTCTGAAGAGATGGTCAACCTAAGGCTGCTCTCAGTTCTCTCTCCTAGAGACGCTGTCCCAGGACGACTTTAAGTAGAGATAGCAAGGCAGGGATGAAGTTTTCACCAACTCCTCTTCCTAAATCTTTGTTGGACATGGATGTAGCCAATTACTGCGAGGGCCTAGACCCGACCTATAGCACACTGGGCTTTGAGAATGCTGATGAGCTTTATTGTGGTGAAAACATGCCGACAGAGCCCAACATCAGTCAAGGAGAAAATGGCGTGAGCTCCAACTGCGCAATCTGTGGCGACAAAGCCACAGGTAAACATTATGGCGCCTCCAGCTGTGACGGCTGCAAAGGCTTCTTCCGCCGGAGCATCAGGAAGAGTCATGTCTACTCCTGCAGGTTTAATCGTCAATGTGTTGTTGATAAAGACAAAAGGAACCAGTGCCGTTTCTGCAGACTTCACAAATGCTTTCGAGCTGGAATGAAGAAAGAAGCTGTGCAGAATGAGCGGGACCGTATCAGCTCTAGGAGGAACATGCAAGACTCACATGATCTGCCGCCAATCACAGCCCTCGCTCATGCTGAAGCTCTCTCGCAGCAGCAGATCAACGCCGCCAGCCCAATGGGCCCTGCTGATGTTTCAGAGAAAAAATCAGCCACTATCAGTGATGTCTGTGAATCTATGAAGCAACAGCTGCTTGTTCTGGTAGAGTGGGCTAAATACATCCCAGCCTTCGGTGAATTGCCACTTGATGACCAGGTTAGTTTATTACGAGCTCATGCTGGCGAACACCTTCTCCTTGGTGTGGCTAAAAGGTCAATGCCATACAAAGACCTCTTGCTTCTAGGTAATGGCTGTGTTGTCCATCGAAACTGCCCTGAGCCGGAAATAGGTCGCGTGTCTAACCGAGTCTTGGATGAACTGGTCCTACCCTTCCAGGACATCCAAATTGACGACAATGAATACGCAGCTCTAAAGGCCATTGTGTTCTTTGATCCAGACGCCAAAAGCTTAAGAGACCCCTCTAAGATCAAGGCGATGCGCTATCAGGTCCAAATGAGTCTGGAAGACTACATTAATGACCGGCAGTATGACTCGCGTGGGCGATTCGGGGAGCTTTTGCTGCTGCTTCCTACTCTGCAAAGCATCACCTGGCAGATGATTGAGCAGCTACAGTTTATCAAGCTTTTTGGTCTTGCCAAGATAGATAACCTGCTGCAGGAGATGCTTCTTGGGGGTCTGACCACAGAACAACCTCACTTACATCACAATGGTCACCCTCAGTTTCCAGTAACAGGACAGACTATAGTCATTAGCTCCATACCAGGACCTGCACAGCCACAGCAGATGGCATCCCCAGATACCCCCATTCCATCTCCCACTTCAGTACAGAACCAGGAGGCCTACAAGCCCTCCGGCAGCCCGGCTCTCCTGCTACAGCCACAGCCCATACCAAACAGACCCTCTCCTGAGCCTCCCCTATGAGTCTCCTCTCTAGCACAGGCCCTGTGAGTTTGTATATGTGTAAATTGTGTGAGTTAAACTCTTCCCCACCTCCTGCGCAACATATTTAACTGATCGAAAGAGAACTTTACAGACAAATTCCAAATGTATTGTCAAAGTGGACCACCACAAATTGAAAATTTATGTTGGAAAGATTTATGGTGTGTTTGTCATGCTGGCAGACCTGCTTATCATCAGCCTACTGCTGGTAGTAACTAGTAAATAGAGACAATATTCGTTTATTAATAACAAATTATTGTCAGTTACAAGAGACTTGTCAACAGTTTTTATACTAATAAA

Function

symbol description
hnf4g Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human HNF4G (hepatocyte nuclear factor 4 gamma).

NR:

description
Hepatocyte nuclear factor 4, gamma

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K08037 NR2A2, HNF4G; hepatocyte nuclear factor 4-gamma

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_05803227_05816159.mRNA True 2035 mRNA 0.47 10 5802909 5816493

Neighbor

gene id symbol gene type direction distance location
CI01000018_05667742_05668807 NA coding downstream 133669 5667619 ~ 5669240 (-)
CI01000018_05588289_05597432 NA coding downstream 205087 5587959 ~ 5597822 (-)
CI01000018_05528561_05576788 ZFHX4 coding downstream 226121 5528561 ~ 5576788 (-)
CI01000018_05472889_05494284 NA coding downstream 307539 5472651 ~ 5495370 (-)
CI01000018_05412935_05458370 NA coding downstream 344467 5412710 ~ 5458442 (-)
CI01000018_05820608_05821533 NA coding upstream 3417 5819910 ~ 5821533 (-)
CI01000018_05827740_05839214 PIGN coding upstream 11083 5827576 ~ 5839214 (-)
CI01000018_05864737_05869576 MCMDC2 coding upstream 47962 5864455 ~ 5869576 (-)
CI01000018_05870993_05880212 SGK3 coding upstream 53820 5870313 ~ 5880705 (-)
CI01000018_05905787_05908656 NA coding upstream 89032 5905525 ~ 5908682 (-)
G106013 NA non-coding downstream 3523 5799157 ~ 5799386 (-)
G105956 NA non-coding downstream 81060 5721518 ~ 5721849 (-)
G105948 NA non-coding downstream 105799 5696758 ~ 5697110 (-)
G105939 NA non-coding downstream 136821 5665853 ~ 5666088 (-)
G105526 NA non-coding downstream 308803 5493836 ~ 5494106 (-)
G106017 NA non-coding upstream 30852 5847345 ~ 5847559 (-)
G106077 NA non-coding upstream 226667 6043160 ~ 6043390 (-)
G106096 NA non-coding upstream 358939 6175432 ~ 6175649 (-)
G106477 NA non-coding upstream 436306 6252799 ~ 6253046 (-)
G106479 NA non-coding upstream 451974 6268467 ~ 6268704 (-)
CI01000018_04856240_04875704 DAP other downstream 927070 4855081 ~ 4876532 (-)
G105200 NA other downstream 1556899 4243467 ~ 4246010 (-)
G105104 NA other downstream 1785092 4007697 ~ 4017817 (-)
G104968 NA other downstream 2302395 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 3402006 2389201 ~ 2488018 (-)
CI01000018_06021105_06025859 NA other upstream 74843 6020861 ~ 6025876 (-)
G106538 NA other upstream 713954 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 824119 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019501 hnf4g coding CM030124.1 CM030124.1 24001200 ~ 24011054 (-)