CI01000018_05827740_05839214 (PIGN)


Basic Information

Item Value
gene id CI01000018_05827740_05839214
gene name PIGN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 5827576 ~ 5839214 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_05827740_05839214.mRNA
ATGAAGATGATGACATTCTTCATTGTGGGACTCATTGTCCATGTAGTCTTCTTTCTCTCAATATTTGACATCTATTTCACGTCCCCTCTTGTCCATGGAATGACACCACAACGTGTCCATCTGGCCCCTCCGGCCAAGCGCTTGGTGCTCTTTGTGGCAGATGGTCTAAGAGCCGACAGTCTCTTTAAGCCAGACGACAATGGGACAGTCAGGGCTCCTTACCTAAGGAGTGTGATTGAAGAGGGCGGCACATGGGGAGTGTCACACACGCGAGTCCCTACAGAATCACGGCCAGGTCATGTGGCTCTACTAGCGGGCTTTTATGAGGACGTTAGTGCTGTTGCCAAGGGCTGGAAGGAGAATCCGGTGGAGTTTGATTCTGTTTTTAATGAGAGCAGACATACCTGGTGTTGGGGCAGCCCTGACATATTACCAATGTTTGCTAAAGGAGCCACTGGAGACCATGTGTACACTCACACGTACCCTCCAGAGCGGGAGGATTTTGCCTCCACTGATGCTTCCAGACTTGATACATGGGTATTTGATGAAGATTTTCTCAGTGTAGCCAAAAGCAATGAAACTCTGCTGAATAAGTTACATGAAGAACAGAATGTGTTTTTCCTTCATCTGTTGGGGATAGACACCAATGGCCATGCCCACAGGCCCATGTCAAAGGAATATCTAGAGAACATTGGCCTGGTTGATGCTGGTGTCGCTGAAATTGTCACTGTGATGGACGACTTTTATGGGCACGATGGAAAAACAGCTTATGTTTTTACGTCTGACCATGGCATGACAAATTGGGAATGGGGGTTAGAAACATACAAGAGAGTGGATGTCAATCAAGCTGATATTGCTCCACTAATGTCATCTCTTATAGGAGTTCCCTTTCCTCTAAACTCTGTGGGTGTCTTACCGCTGAATTACCTGAATAACAGCCAGCACTTTAAGGCCGAGAGCATGTATTCAAATGCTGTTCAGATCTTGGAGCAGTTCAGGGTGAAAATGGCACAGAAGAAAGAAACAACAGTATCCTTTCTGTTTACACCCTACCAGCCTCTGACTGACTCTAAACAGATGGATTTTGTGCGTCAGGCAAGAGATTTGATCAAGAAAGGACAGTTTAATGAAGCAATCCATTATTGTGAAGATCTGATAGCCCAGGCCATGGAAGGCTTGTCTTATTATCACACGTATGATCGGTTCTTCCTGGGCAGCAGTGTTGTTCTGGGTTTTATTGGTTGGACCTCTTATGTGGTTTTGTTCATCCTGAAGACCCATGCTAGCCTACGCAAACCTCCATCTAACATGCATATGGTAACAGAAAGGAATCTAGGCCAGGCGTTTCTATGTATAGGTCTGCTTGTGGCTCTGTTCTTGTTGGTCCAGTCGAGTCCTTGGACCTACTACATCTACTGCTTGCTCCCTGTGCCCGTGTGGCACTCCGTCATGAGGGAATTTGAAACTCTTGCTGGTCTGATTCGTTCGATCCCCTCATTACCACTCAGCAAATGCTTTGGATATTTTTTGCTGGTTACATTCGGAATTGAGTTACTAGTCATGAGTTTTTTCTATCGGGCCATGTTGACCTTGGGGCTGGTGGTGCTGGCGCTGTGGCCTATGGTTTCTGGCCTCTATACAAAAGCAAAGATGGTGCAGGTGGTGCTTTGTGCTTATACCCTGACCAGCACCCACTCCAGTCTGCAGCTGAAGCAAGGCCTGCCGCTCTTCAACCAGCTCGTTAGCTGGTTCACTCTAGTTTCCTCATTTTTGATACCATTGTTGAGTTCAACCAAGCTCTTTCAGAGACTGCTGAGTATCCTGGTGTCCTTGGTGTGTGTCTACCTTCTTCTGAGCACAGGGTATGAGGCTCTTTTTCCTCCGGTGCTGTCATGGCTCATGTTTGCATGGATCAACATTGAGCAGGAAGCCATGACCACTCAAGAAAGTACATATCGAACTGAGCTCTTCAGCATTGATTTTGCTGAAAATATTGACATTACCAAAATCAGGCAACTGAGACTGGATGACATTCGGAGATCTTACTTTTTTGCATCCTTTTGAACTACAGACTATTTGATTTGTGTCTTATGATTGTTGATATATTTTTAATGTTTACAGTCCTTAACTGTTTAACTAGGTGTTTTTCATAATAACTGCATTCTTTGGCTGCGGTAACATTGCCTCTATCAACAGGTAAGCTGTTTGAAGAAGAAAAGTGCTATAAA

Function

symbol description
pign Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 1. Orthologous to human PIGN (phosphatidylinositol glycan anchor biosynthesis class N).

NR:

description
Zgc:172324 protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05285 PIGN; GPI ethanolamine phosphate transferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_05827740_05839214.mRNA True 2228 mRNA 0.45 19 5827576 5839214

Neighbor

gene id symbol gene type direction distance location
CI01000018_05820608_05821533 NA coding downstream 6043 5819910 ~ 5821533 (-)
CI01000018_05803227_05816159 HNF4G coding downstream 11083 5802909 ~ 5816493 (-)
CI01000018_05667742_05668807 NA coding downstream 158336 5667619 ~ 5669240 (-)
CI01000018_05588289_05597432 NA coding downstream 229754 5587959 ~ 5597822 (-)
CI01000018_05528561_05576788 ZFHX4 coding downstream 250788 5528561 ~ 5576788 (-)
CI01000018_05864737_05869576 MCMDC2 coding upstream 25241 5864455 ~ 5869576 (-)
CI01000018_05870993_05880212 SGK3 coding upstream 31099 5870313 ~ 5880705 (-)
CI01000018_05905787_05908656 NA coding upstream 66311 5905525 ~ 5908682 (-)
CI01000018_05910381_05911415 RRS1 coding upstream 70904 5910118 ~ 5911415 (-)
CI01000018_05969322_05974836 ARX, ARXA coding upstream 130075 5969289 ~ 5975001 (-)
G106013 NA non-coding downstream 28190 5799157 ~ 5799386 (-)
G105956 NA non-coding downstream 105727 5721518 ~ 5721849 (-)
G105948 NA non-coding downstream 130466 5696758 ~ 5697110 (-)
G105939 NA non-coding downstream 161488 5665853 ~ 5666088 (-)
G105526 NA non-coding downstream 333470 5493836 ~ 5494106 (-)
G106017 NA non-coding upstream 8131 5847345 ~ 5847559 (-)
G106077 NA non-coding upstream 203946 6043160 ~ 6043390 (-)
G106096 NA non-coding upstream 336218 6175432 ~ 6175649 (-)
G106477 NA non-coding upstream 413585 6252799 ~ 6253046 (-)
G106479 NA non-coding upstream 429253 6268467 ~ 6268704 (-)
CI01000018_04856240_04875704 DAP other downstream 951737 4855081 ~ 4876532 (-)
G105200 NA other downstream 1581566 4243467 ~ 4246010 (-)
G105104 NA other downstream 1809759 4007697 ~ 4017817 (-)
G104968 NA other downstream 2327062 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 3426673 2389201 ~ 2488018 (-)
CI01000018_06021105_06025859 NA other upstream 52122 6020861 ~ 6025876 (-)
G106538 NA other upstream 691233 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 801398 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location