Gene
RNA
| Item | Value |
|---|---|
| gene id | G105199 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 4612697 ~ 4615380 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC107582590 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU119575 | False | 826 | lncRNA | 0.44 | 5 | 4612697 | 4615380 |
| TU119574 | True | 360 | lncRNA | 0.46 | 2 | 4614754 | 4615380 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_04604468_04611851 | USP12.S, USP46, USP12, USP12.L, RGD1561481, USP12A, USP12-LIKE | coding | downstream | 846 | 4603787 ~ 4611851 (-) |
| CI01000018_04595424_04596449 | GPR12 | coding | downstream | 15110 | 4594465 ~ 4597587 (-) |
| CI01000018_04557779_04561445 | RNF6 | coding | downstream | 50700 | 4557636 ~ 4561997 (-) |
| CI01000018_04491510_04539751 | ATP8A2 | coding | downstream | 72946 | 4491235 ~ 4539751 (-) |
| CI01000018_04464837_04473051 | NA | coding | downstream | 139646 | 4464638 ~ 4473051 (-) |
| CI01000018_04627321_04645724 | LNX2A, LNX2 | coding | upstream | 11789 | 4627169 ~ 4646182 (-) |
| CI01000018_04657706_04674073 | NA | coding | upstream | 42191 | 4657571 ~ 4674073 (-) |
| CI01000018_04738374_04757471 | NA | coding | upstream | 122900 | 4738280 ~ 4757471 (-) |
| CI01000018_04759598_04770734 | TMPRSS7 | coding | upstream | 144129 | 4759509 ~ 4770734 (-) |
| CI01000018_04773554_04792048 | SPATA13 | coding | upstream | 157846 | 4773226 ~ 4792048 (-) |
| G105213 | NA | non-coding | downstream | 24922 | 4584628 ~ 4587775 (-) |
| G105307 | NA | non-coding | downstream | 158219 | 4454261 ~ 4454478 (-) |
| G105306 | NA | non-coding | downstream | 167330 | 4444802 ~ 4445367 (-) |
| G105304 | NA | non-coding | downstream | 180215 | 4432191 ~ 4432482 (-) |
| G105277 | NA | non-coding | downstream | 326705 | 4285739 ~ 4285992 (-) |
| G105328 | NA | non-coding | upstream | 5971 | 4621351 ~ 4621628 (-) |
| G105209 | NA | non-coding | upstream | 34501 | 4649881 ~ 4651347 (-) |
| G105336 | NA | non-coding | upstream | 126281 | 4741661 ~ 4741921 (-) |
| G105350 | NA | non-coding | upstream | 152231 | 4767611 ~ 4768386 (-) |
| G105413 | NA | non-coding | upstream | 642932 | 5258312 ~ 5258511 (-) |
| G105200 | NA | other | downstream | 366687 | 4243467 ~ 4246010 (-) |
| G105104 | NA | other | downstream | 594880 | 4007697 ~ 4017817 (-) |
| G104968 | NA | other | downstream | 1112183 | 3482104 ~ 3500514 (-) |
| CI01000018_02389202_02488018 | CNTNAP2, CNTNAP2A | other | downstream | 2211794 | 2389201 ~ 2488018 (-) |
| G103842 | NA | other | downstream | 2652639 | 1959497 ~ 1960058 (-) |
| CI01000018_04856240_04875704 | DAP | other | upstream | 239701 | 4855081 ~ 4876532 (-) |
| CI01000018_06021105_06025859 | NA | other | upstream | 1275956 | 6020861 ~ 6025876 (-) |
| G106538 | NA | other | upstream | 1915067 | 6530447 ~ 6533512 (-) |
| CI01000018_06639339_06649926 | NA | other | upstream | 2025232 | 6639207 ~ 6649971 (-) |
