Gene
RNA
| Item | Value |
|---|---|
| gene id | G105526 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 5493836 ~ 5494106 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: E3 ubiquitin-protein ligase TRIM39-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU119933 | True | 271 | lncRNA | 0.36 | 1 | 5493836 | 5494106 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_05412935_05458370 | NA | coding | downstream | 35394 | 5412710 ~ 5458442 (-) |
| CI01000018_05222497_05243379 | ZC2HC1A | coding | downstream | 250457 | 5222497 ~ 5243379 (-) |
| CI01000018_05163296_05172812 | NA | coding | downstream | 321024 | 5163027 ~ 5172812 (-) |
| CI01000018_05037255_05110400 | CTNND2A | coding | downstream | 383436 | 5037255 ~ 5110400 (-) |
| CI01000018_05008490_05017148 | NA | coding | downstream | 475394 | 5008409 ~ 5018442 (-) |
| CI01000018_05528561_05576788 | ZFHX4 | coding | upstream | 34455 | 5528561 ~ 5576788 (-) |
| CI01000018_05588289_05597432 | NA | coding | upstream | 93853 | 5587959 ~ 5597822 (-) |
| CI01000018_05667742_05668807 | NA | coding | upstream | 173513 | 5667619 ~ 5669240 (-) |
| CI01000018_05803227_05816159 | HNF4G | coding | upstream | 308803 | 5802909 ~ 5816493 (-) |
| CI01000018_05820608_05821533 | NA | coding | upstream | 325804 | 5819910 ~ 5821533 (-) |
| G105464 | NA | non-coding | downstream | 4101 | 5365050 ~ 5489735 (-) |
| G105219 | NA | non-coding | downstream | 209450 | 5282706 ~ 5284386 (-) |
| G105413 | NA | non-coding | downstream | 235325 | 5258312 ~ 5258511 (-) |
| G105350 | NA | non-coding | downstream | 725450 | 4767611 ~ 4768386 (-) |
| G105336 | NA | non-coding | downstream | 751915 | 4741661 ~ 4741921 (-) |
| G105939 | NA | non-coding | upstream | 171747 | 5665853 ~ 5666088 (-) |
| G105948 | NA | non-coding | upstream | 202652 | 5696758 ~ 5697110 (-) |
| G105956 | NA | non-coding | upstream | 227412 | 5721518 ~ 5721849 (-) |
| G106013 | NA | non-coding | upstream | 305051 | 5799157 ~ 5799386 (-) |
| G106017 | NA | non-coding | upstream | 353239 | 5847345 ~ 5847559 (-) |
| CI01000018_04856240_04875704 | DAP | other | downstream | 617997 | 4855081 ~ 4876532 (-) |
| G105200 | NA | other | downstream | 1247826 | 4243467 ~ 4246010 (-) |
| G105104 | NA | other | downstream | 1476019 | 4007697 ~ 4017817 (-) |
| G104968 | NA | other | downstream | 1993322 | 3482104 ~ 3500514 (-) |
| CI01000018_02389202_02488018 | CNTNAP2, CNTNAP2A | other | downstream | 3092933 | 2389201 ~ 2488018 (-) |
| CI01000018_06021105_06025859 | NA | other | upstream | 397230 | 6020861 ~ 6025876 (-) |
| G106538 | NA | other | upstream | 1036341 | 6530447 ~ 6533512 (-) |
| CI01000018_06639339_06649926 | NA | other | upstream | 1146506 | 6639207 ~ 6649971 (-) |
