XLOC_008248



Basic Information


Item Value
gene id XLOC_008248
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2844812 ~ 2855629 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00018750
ACTACATGCAGACCAAACTACACCATGAAACAAGACATaatgggCCCATAACATCAGTTCAGAGGGAGTGTCCTGTAAATGAAGTTCCTGTTGTTGATGCCATTCCTCTGTGTGCATGGCTTCATCCTCTTCCTCTCCTTCTTCCTCTTCTGCCCAATTGCTCCTCGTCCCCATGGGAATCACATGAGGATCCAGCAGCTCTAGCTGGTTGAAATCTTCTGGGAAATCCATCACTGaagaaaaaggaaggaaggaaggacagaaAGAAAATTATTGTACaattataacttttatttaatttgaatatgtATTGTTTCGATTTTTTAATGACTACTActatgttattgtttttatatgatctatttaaatataaaaactgcaatgcatttgtcatgccaatataGAAAAATTGTATTGAATTGAGA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00018750 True 425 lncRNA 0.36 2 2844812 2855629

Neighbor


gene id symbol gene type direction distance location
XLOC_008247 NA coding upstream 29098 2814070 ~ 2815714 (+)
XLOC_008246 CR382327.3 coding upstream 159106 2685055 ~ 2685706 (+)
XLOC_008245 CR382327.2 coding upstream 170222 2673935 ~ 2674590 (+)
XLOC_008244 SH2B2 coding upstream 266673 2559875 ~ 2578139 (+)
XLOC_008243 cux1b coding upstream 300978 2520319 ~ 2543834 (+)
XLOC_008249 mre11a coding downstream 1067 2856696 ~ 2890101 (+)
XLOC_008250 NA coding downstream 9995 2865624 ~ 2865929 (+)
XLOC_008251 NA coding downstream 133162 2988791 ~ 2989951 (+)
XLOC_008252 rcbtb2 coding downstream 269507 3125136 ~ 3162586 (+)
XLOC_008253 CABZ01053592.1 coding downstream 314345 3169974 ~ 3201297 (+)
XLOC_008463 BX663520.1 misc downstream 18396562 21252191 ~ 21252282 (+)
XLOC_008239 CU695208.1 non-coding upstream 486187 2358511 ~ 2358625 (+)
XLOC_008236 CU638704.1 non-coding upstream 971034 1873658 ~ 1873778 (+)
XLOC_008255 NA non-coding downstream 381966 3237595 ~ 3239957 (+)
XLOC_008258 NA non-coding downstream 527185 3382814 ~ 3383114 (+)

Expression



Co-expression Network