XLOC_008250



Basic Information


Item Value
gene id XLOC_008250
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2865624 ~ 2865929 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00018751
ccaaagtttacaggtctgtgttctctgaactccgctcaggcggtggactacttcattctgattgcttgctgccgaaccgcatcatagccaatgaagacgcgccgctgtttctcgccgccggttctcgttaaaaaatgaatgacttctggctactttgacaatctcgccgctttcggtttgtgatcgctcctcagtttgtgaaggattccccgcgtagtcacgccactccgcctcctttccccgctcctcaatttgtgccatagatatatacactagatatcgcatagggaccctgagcatgcgtca

Function


GO:

id name namespace
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00018751 True 306 lncRNA 0.51 1 2865624 2865929

Neighbor


gene id symbol gene type direction distance location
XLOC_008248 NA coding upstream 9995 2844812 ~ 2855629 (+)
XLOC_008247 NA coding upstream 49910 2814070 ~ 2815714 (+)
XLOC_008246 CR382327.3 coding upstream 179918 2685055 ~ 2685706 (+)
XLOC_008245 CR382327.2 coding upstream 191034 2673935 ~ 2674590 (+)
XLOC_008244 SH2B2 coding upstream 287485 2559875 ~ 2578139 (+)
XLOC_008251 NA coding downstream 122862 2988791 ~ 2989951 (+)
XLOC_008252 rcbtb2 coding downstream 259207 3125136 ~ 3162586 (+)
XLOC_008253 CABZ01053592.1 coding downstream 304045 3169974 ~ 3201297 (+)
XLOC_008254 NA coding downstream 353205 3219134 ~ 3223448 (+)
XLOC_008255 NA coding downstream 371666 3237595 ~ 3239957 (+)
XLOC_008463 BX663520.1 misc downstream 18386262 21252191 ~ 21252282 (+)
XLOC_008239 CU695208.1 non-coding upstream 506999 2358511 ~ 2358625 (+)
XLOC_008258 NA non-coding downstream 516885 3382814 ~ 3383114 (+)
XLOC_008259 FO704837.1 non-coding downstream 640380 3506309 ~ 3506423 (+)

Expression



Co-expression Network