XLOC_008253 (CABZ01053592.1)


Basic Information

Item Value
gene id XLOC_008253
gene name CABZ01053592.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3169974 ~ 3201297 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016627
CTCGCGAACGCCAGTGAGTGGCGCTCGGTGCGCAGTAACACGCAGGTTGTGCTTTAAAACACCGCAACCTGCCTACATAGACAGCACTATAGTCATAACAGGAACAACGCACTCTAGATGCGCCTGACATTCACACCAAGCACACCGCAGAGCTGGAAAAAAAACACGTTCTGCGAAACCGAATGATGCATTGAATGCCTTCAGCGTTGTCTAGCGAGCTGACTTGTTGTGATTTGGGACGCGGCCACAGCATTGATTCATTCGCGTGAAGCGTCGTTTTTTTTTCGCGCGGCTTGGAGAGGAAACATTTAATTATGGCTTTTCCTTGCGAAATCTGAAGGTTTGCAGGTTGAAGACAACTCCTGATGCCATCTACCCACAATCAGTATCTTAACCAACAGTGTAAAAGATGCCACTACTTACTTTAAGCCTGAAAGCGGAAAGTGCTCCAGACCTCAAGGGAGGATCTACAAGACTCTACATGAAAGCTTGAGAACACATGAACCTTCAGGAAACATGAGTGTGAACGATGAACACGCCATATCCTTCGGGACCCCCAATGAAGATAACTGCGACGAAATCAGGAACAACAACAGACATGCTGAGGATTCCCTGGATGGAGATGCCAATGCTAATGAAATCCAGAGGGTGGATGGAGGAACAACTTTGGAAACAACCGACACTGTGTCCTCTGGGGTATCGCACACTGAAGAACAGGTGAAGATGATTATTCAGGGCACAGATTCCCCTTGTGATGATCCAGACTTAGCAGAGTTTGAGATGTTGGAAATTCAGGAATTAGAAGATGATGGAGAGAACAATATTCCTAAAGGTGTCATGAAGGGAGCTCTATCCAACAACATGAAGAAGAGTGATGCAGAGTCTGATAGCAAAGTCTTTCCCCAGTTTTCTTCAAGTGAGCAAGAGTTTACTGTTTGTCCTCAGTCCACGAGCAAAGAAACAGTGAACAGCATAGCCaaaatggagtttagttctgaaAACGATGTCTTCGTCACTTGTCTCTCTACAATGTCTAGTCTTGGAGGAAGTCTTGCCAGTGCCCTGGACCATGCTGGTCGGACCCAAAGCACTGATTCTTGGCATGCTCCCTTAGGGCCCTACCGAACTCTCTCTGAGGATCTTACACTTGCCTCACAGTCCTGTATGACAATTTCAGACAAAACCCAGAGCTCTCTTCACACAGAGAACATGCATCATCAGTCAGGAAAATGTACAACACACATTGGCGGTGTTGATCTCAATCTTAACTCAACCATCTTGCCTGAGGAACCACTTTTAGAAGCACAAGAAAACCAATCAGTTATTGACTCTGTAAGATGCGAGAGCTCAGGTCAACTCACAAATGGTATGAGTGAATGTAGCATTACAAGAATCACAAATGTCCCTAACGAATCAGGAAGTGCCGGTCAGGACAATCCAAGAGAATCTGAAGTTCATGCAAATGAGTGCCATTTAACAGAAGGCAAGTCTCCGTATTTGAAACCAATATCCGCTGAGGAGAAACCAAGCAAACCTCTTGTCTCAGATAACACACAGTCTACTTCACACATCAGAAGGTTCTCCCATGATTCCACTGGTGTTATAAAGAATAAGCTTAAGTCACAGGACTTTCAGGAATTTCCTGATAAAATCTCAAAATCAAGCTCAAAGGGTTCACCTGTTCACTCTACTGGTTCTGAACCACAACCATACAAGAAACAATCATCTTTTGAAAGAACCAGAAGTTCTAGTTCTAGCTTAGAAAGGCGAAGACCTTGGGCAAGCCCTTCTCGCTCAGAGACCCCTCAATCCAATCATAGTTCACCTCGGAAGCTGCCGCCTTCATCACCAGCCAAACATTTAAGCACAAGAGAAGCAAGTCAAGAACAGAGTGAATCTTTTCAAAGGGGAACCACTGGATTGAGGCAACCAAGTAAAAGTTTCCTCACTAGTAGTAGCAGTCTCCCCAAAACTGTCATTCTTCAACAACCCTCTAGAGCGGAGTCTGAATCTAAGAAGTCTTCTCCTCCTCAGAAGCCCAAAAACGTAAGACCAAAAATCATAACCTATATCCGCAAGAGCCCCCAAGTAAAACAAATGTCTGAAGGTCCCTACGAAGTATCGACACTTCCACCAAGACTTACGCCATACGGTAGCTCAACAACCTCAAAAGAGCCCAAGACAGAGGGGTCCAGAGGTTCACCCGTGTTGAGCTCCTCTAATATTCTGTATGATAAATACCGGCAGGAGGTACAGAGATCAGGCTACTACTCCCCTCCAGGACTAATGGCATCTGGAATCAGGCCACCCAGCCATACTGTCCCCCATAAACTTGTGGGCAAATCTGAGAGTTTCCACGGGAAGCTGCCGGATCAGTGCTTACATGAGGTTGGTAGAGCAGTTCAGCTAAATACCCatgatgctgctgctgctttccGCTTTCCTAGAGCATTAAAGCCTCAGCTCGGACTTGGAGCCGTCACCAGACAGCCTGCTACTAAGAACAGGACTGTTGTGCCAGGTCAAAGGTCTGCATCACCCCTCAGTTATATGGCTCCAGCTGTTCAGGCTTCAAGTAGTCACCAGGAACCCCCAGTGGACCAGAAGAGACTACCCTTGGGTATGTCCCCCAAATTTTTGCTCCCCAAAGCGGGTCAATCTGGACTTCGTCCACCCGGCTTCTCCCATCTGCCTCCTGCTCGACTGGCTGCCTTTGGCTTCGTCCGCAGTGCCAGTGTGTCATCTGTGTCCAGCAATCAATCAAGCGACAGCGCACATAGTGACCACTGCCGAACCAACCGTCCACACAGCAGCAGTGATGAAACACTGCTGTCCCGCTCTCCTCTTCCTCCCACCGAGAGCAGTTTTAGCAGAACTCAGAGTCCACGCAGACCCCTGCACCCGCCCCCTCGCACATCACCAGCGGGTAAGCCACGCCCTCTTACCGTCAGCACACACTctgcatacactctcagaaaaaaaggtacaaataaTGATTAGGAGTACCTGATTATTAAACTACTCAAACAAACATGTATATGTGTTATTTTTCAGGCATGTAGTAATAGTAACAATagatgttaataaatgctgtattgaCTCAATTTCGTGTTGTTTTGTGTAAATGAATAGTTTGGAGATAAAGTGTAAGCTTTTCTGGTGCAATGTGCTTGGGGGAATAATAATTCTGCATGCGCTGTATTAATCTGCTCTCTGCACTGAAACGTCTCTTGAGCAGCATATCATCatgttagagtgatttctgagGGATCACATGCTGAATGTAACCTGACCAATGATGTGTCAGCAGCAGTCACATGACCCTGTGTGGAGAGGTGTGTCAGTGATGTCATGATGCTGTCTGTCACCATGGTGCAGCATTCAtggtgttcacacacacactagaac
>TCONS_00016628
CGCATCTATAGGCCTCCACTTTCACTCTGGGAAAAGTGGAGCTGATCGAGAGTTTGGCTTTAAAGTCTTGAAGTTTTCGCGTAGTATGGTGCATTAGCTTTTAGATAAGCTGTAGGTCGGAGCTTTTTTCCAAGTCTGAGATTAAATATCGGACTGGAAGCGGATGATGTTGTTTGTCATCTCGAGTCTGGATTCTGGATGTGTTTACTCTACTAACGGACGAATCGGCTGGGCTAATGTTTTCATTACTGGGGTATTTTGTGCCTCTTTTCACATTCGTTTTAAAACGGGACACTGAAAACCAAGATCTCCAGTCATGTCCACACAGCAGCAGTGATGAAACACTGCTGTCCCGCTCTCCTCTTCCTCCCACCGAGAGCAGTTTTAGCAGAACTCAGAGTCCACGCAGACCCCTGCACCCGCCCCCTCGCACATCACCAGCGGGTAAGCCACGCCCTCTTACCGTCAGCACACACTctgcatacactctcagaaaaaaaggtacaaataaTGATTAGGAGTACCTGATTATTAAACTACTCAAACAAACATGTATATGTGTTATTTTTCAGGCATGTAGTAATAGTAACAATagatgttaataaatgctgtattgaCTCAATTTCGTGTTGTTTTGTGTAAATGAATAGTTTGGAGATAAAGTGTAAGCTTTTCTGGTGCAATGTGCTTGGGGGAATAATAATTCTGCATGCGCTGTATTAATCTGCTCTCTGCACTGAAACGTCTCTTGAGCAGCATATCATCatgttagagtgatttctgagGGATCACATGCTGAATGTAACCTGACCAATGATGTGTCAGCAGCAGTCACATGACCC

Function

GO:

id name namespace
GO:0019859 thymine metabolic process biological_process
GO:0140115 export across plasma membrane biological_process
GO:0006210 thymine catabolic process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117388

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016627 False 3408 lncRNA 0.46 5 3169974 3201297
TCONS_00016628 True 842 lncRNA 0.43 2 3196151 3201213

Neighbor

gene id symbol gene type direction distance location
XLOC_008252 rcbtb2 coding upstream 7388 3125136 ~ 3162586 (+)
XLOC_008251 NA coding upstream 180023 2988791 ~ 2989951 (+)
XLOC_008249 mre11a coding upstream 279873 2856696 ~ 2890101 (+)
XLOC_008250 NA coding upstream 304045 2865624 ~ 2865929 (+)
XLOC_008248 NA coding upstream 314345 2844812 ~ 2855629 (+)
XLOC_008254 NA coding downstream 17837 3219134 ~ 3223448 (+)
XLOC_008255 NA coding downstream 36298 3237595 ~ 3239957 (+)
XLOC_008256 LO017656.2 coding downstream 45178 3246475 ~ 3251221 (+)
XLOC_008257 foxo1a coding downstream 83119 3284416 ~ 3379041 (+)
XLOC_008258 NA coding downstream 181517 3382814 ~ 3383114 (+)
XLOC_008463 BX663520.1 misc downstream 18050894 21252191 ~ 21252282 (+)
XLOC_008247 NA non-coding upstream 354260 2814070 ~ 2815714 (+)
XLOC_008246 CR382327.3 non-coding upstream 484268 2685055 ~ 2685706 (+)
XLOC_008259 FO704837.1 non-coding downstream 305012 3506309 ~ 3506423 (+)
XLOC_008260 NA non-coding downstream 326108 3527405 ~ 3529781 (+)
XLOC_008262 NA non-coding downstream 392042 3593339 ~ 3595259 (+)

Expression


Co-expression Network