XLOC_008271


Basic Information

Item Value
gene id XLOC_008271
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4553896 ~ 4554428 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018882
CTCTGAGTCTGAAAACTGACACACAAAGAGACAGCGATTTACCAGTTAGTCACCCAAAGCCATAACCACAGAGCAATCTAAAGAGGAGCAAATCAGCTGTGGCAAACAAACCAAGTGTGAAGAGAAGTGTGTGACATGCCAAGAAGGATGCAAAGGGAgattataaaacacacacacggaCTATTGATCAATGTAAGACAGTTTGATGAAAGTTTAAGCCCACATCCTGTTAATATGCAAACAATATATGCTAATGCAGCGATAACATCTGCAGTTTAAAGGTCTGTTTGAAGGACTTCCACACTTtagactttattattattacaccaaGGAGTGGTGCGCTGTGTTGGCCTTCCACTACACTGTTAATGTTGCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018882 True 377 lncRNA 0.41 2 4553896 4554428

Neighbor

gene id symbol gene type direction distance location
XLOC_008270 NA coding upstream 21931 4528549 ~ 4531965 (+)
XLOC_008269 NA coding upstream 232881 4313091 ~ 4321015 (+)
XLOC_008268 NA coding upstream 599205 3949880 ~ 3954691 (+)
XLOC_008267 CABZ01061591.1 coding upstream 627907 3825117 ~ 3925989 (+)
XLOC_008266 CABZ01061592.1 coding upstream 737139 3808996 ~ 3816757 (+)
XLOC_008272 si:dkey-35i13.1 coding downstream 78354 4632782 ~ 4635819 (+)
XLOC_008273 rnf169 coding downstream 414700 4969128 ~ 4985077 (+)
XLOC_008274 spcs2 coding downstream 433761 4988189 ~ 4999810 (+)
XLOC_008275 abcg1 coding downstream 474180 5028608 ~ 5074983 (+)
XLOC_008276 mxf coding downstream 531910 5086338 ~ 5106171 (+)
XLOC_008463 BX663520.1 misc downstream 16697763 21252191 ~ 21252282 (+)
XLOC_008264 NA non-coding upstream 835513 3682312 ~ 3718383 (+)
XLOC_008262 NA non-coding upstream 958637 3593339 ~ 3595259 (+)
XLOC_008278 NA non-coding downstream 702073 5256501 ~ 5256782 (+)
XLOC_008289 NA non-coding downstream 913670 5468098 ~ 5471508 (+)
XLOC_008291 NA non-coding downstream 1287129 5841557 ~ 5853342 (+)
XLOC_008292 BX088654.1 non-coding downstream 1300683 5855111 ~ 5855225 (+)
XLOC_008297 NA non-coding downstream 1604581 6159009 ~ 6160503 (+)

Expression


Co-expression Network