XLOC_008272 (si:dkey-35i13.1)


Basic Information

Item Value
gene id XLOC_008272
gene name si:dkey-35i13.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4632782 ~ 4635819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016645
CTGAAtgaggctgctgctgctgctgctggagcgTTCAGATGATCAAAGGCGATACGTCATTGCGCGCTGCAGCGATTGGCTGGATTCTGCTCCTTTTTCTCCAGAATTTGCAACCGCGACCGGTCTTCGCCTCCGGAGCAGCGACATCCCTACAGTAGAGGCAGGTGGACTTGTTTCCCCTCAAGAGAAATGAAGGCAATATAGCGCGCGCATTCGGCAGGGGTGGACATTTCTATTCGCTTTCGCCTCctcagttttttttctccccctgCAATACAGACACTGGACTAAATGAGTGCCCGGACCTTGGAGAGACTGGCGCTTTCCATTCCCCACTGTGCCTTAAACGGAACCGGCAATGGCACCTGCTTCGACCGGGTGGATCAGCTGTTCCAGGCGTTCTCCTCCACCGCCGTGCTTTTCGTGCTCATCACGATGATTATCGGGATAATATTCGTGTCCGTCACCACCTTCCACTTTCACAAAAGCAAGATGAAGAAGCGCAAGATACAGAAAGCGCAGGAGGAATACGAGCGCGACAACTGCAGTCCCAAAGCGGCCAAAGGAAAGCCGGCGGTCCGGCAGTGCATCATGGTGAGACCCCCTACGGCAGTGCGGAAAAGTGATCCAGATCCCGGCCTGACGGAGGACACTGGACTCTCAGGACATCAGCCGAAGGATGATAACTTGTTGGAATCGGTCGCTGTGTCTTGATAACCCAGCCTTCAGGAGGACCCTGTAAATAACCTCAGTACCCATATGATATTACCTACGGAATATATCGATTCTTTGTATAAGCATTAGAGTTGATAAGTTTTCATCATAGATCCCGAAGGAGCCCTCTGGATGCTCAAAAAGGAGGAAAGATTGGGGGAAAGGCAATGCTGACGGAATGTCTATCATAATTTAGATCAAAAATGGGATCCAATCAAGAGAGTGCTGGATTAAAGTCTCATCTTGGATTAAATTAGCAAAGTCTAAATGAGTTGATTTTAATAGACAGTACTGGAATGTCCATCATAATTAGGAGACAATAAGGAGAAACTGACATTAATTATCTGAAAGGATACTAAACATGAATGGGATTTGATCATAATTTCAAGCAAACTGAAATGGGCTCAATCCTGAGTGAGAACCTGATAAATGAATGTAATTGAGAATACATTAATGAGTTGATCTTTTAGCAGTATTTTAGGATGACAGTGATGCAATTACTGAAATACTGTATTAATTGGTTAATCCAATTGCATACTGAATaattaaacattgtaaaaaattaGGATGAGATGGGGAATTGAATTCCTGGGGAGAATAAAATAGACAATCTAAAAAGggttttatgaaataataaaaactaattaggAGTCAATcccaccccccaaaaaacacCAATTAAGAACACATAAGCATCAAATAGTTAATAAACTCGTATAGAAATTGATGAGAAACCTCTTAAAAATCACAACTGTTTctcttttgtgaaaaaaaaaatcttggggGAAATAAATATTGATCAAAAAATATATGAACTAAATATAAATGACATTTACTTTAGTTCCAACCCAGTCCCAACTGGATTAAACAGCAATCCTCTACAAATCTAATTATTACCATGACTCTGATTTTGATATATTTAAGAGTCAACTCATATGTGGATCCAATGAAACCTCTCTTCAATCCAAAATGTGAATCCTCTAAGAACATCCCACTATTCTCAAGCCACATTTAGCTCAGAATTACAGCTAATCCATGCACTAATTGGCTGTATCCCATTAGCGTTACCTACAAATTATGATAGGCATTTCTTTGGGATACATTGTTCGTCTCGTCCACTCTTCTTTATATCGCTGTGCATCCAATGAGGAGGAATAATTGTAAACAGGGCCATCACCACTGACAAACTACGGACCTACTGACAGTACTTCAGAGTTTATGACTGACGCTCTCTTGTATAAAGTCTGTACAGACGCTGGGATAAAGACAATGGTCTTCTTCAACACAACTCGCGATGATTTGCCTTTGTTTGAGTTTTAGGCAGCGTTCTTGTTTCGTTTGACAAATAAACCTCCTAAATTGAGATTTAATCCTATAATCTCggtggcttttttttttccaggtagAAGTGCAGTTCGTGCCATTCTGGCTTGGCATGAACAGGTTTAGTGTTTTTAACCCCTTAATCCCCGAGACTGTTAATGTGCAATTGCAGCTCTAGTGGTAGTAGTATAGCCTATATTGTTTCGTTCATGGCACTGTATAATCATAGTAATATTTATGTAACCTGGGGCATTTGGGTTTTGTGTTACAGCTCTGTATTAACGCTCCTTTTTTTGGCATTTCCGCTCTAGATGAATATAACACTTATGATCAAGTactctattttttattattctagaCTAGCGTAATGATCAATAAGTAATAAGACGAGATTTTAAACAAGTCATTTTATGTATTTCCTTGACATTGTGTTTTTAACGGAAACTGGAGCTATAGACCGGAATATCACGTATTGTAACAGATTgcagtttgttttgattttgttcaATGCATTCGATTTTGAATTAACAATAAAGTATTGTGCAAAAAA

Function

symbol description
si:dkey-35i13.1 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Orthologous to human C11orf87 (chromosome 11 open reading frame 87).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8008 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Orthologous to human C11orf87 (chromosome 11 open reading frame 87).

Ensembl:

ensembl_id ENSDARG00000097648

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016645 True 2587 mRNA 0.40 2 4632782 4635819

Neighbor

gene id symbol gene type direction distance location
XLOC_008271 NA coding upstream 78354 4553896 ~ 4554428 (+)
XLOC_008270 NA coding upstream 100817 4528549 ~ 4531965 (+)
XLOC_008269 NA coding upstream 311767 4313091 ~ 4321015 (+)
XLOC_008268 NA coding upstream 678091 3949880 ~ 3954691 (+)
XLOC_008267 CABZ01061591.1 coding upstream 706793 3825117 ~ 3925989 (+)
XLOC_008273 rnf169 coding downstream 333309 4969128 ~ 4985077 (+)
XLOC_008274 spcs2 coding downstream 352370 4988189 ~ 4999810 (+)
XLOC_008275 abcg1 coding downstream 392789 5028608 ~ 5074983 (+)
XLOC_008276 mxf coding downstream 450519 5086338 ~ 5106171 (+)
XLOC_008277 pgm2l1 coding downstream 480360 5116179 ~ 5148793 (+)
XLOC_008463 BX663520.1 misc downstream 16616372 21252191 ~ 21252282 (+)
XLOC_008264 NA non-coding upstream 914399 3682312 ~ 3718383 (+)
XLOC_008278 NA non-coding downstream 620682 5256501 ~ 5256782 (+)
XLOC_008289 NA non-coding downstream 832279 5468098 ~ 5471508 (+)
XLOC_008291 NA non-coding downstream 1205738 5841557 ~ 5853342 (+)
XLOC_008292 BX088654.1 non-coding downstream 1219292 5855111 ~ 5855225 (+)
XLOC_008297 NA non-coding downstream 1523190 6159009 ~ 6160503 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_01625114_01626286 NA coding CI01000092 null 1624607 ~ 1626717 (+)