XLOC_008274 (spcs2)


Basic Information

Item Value
gene id XLOC_008274
gene name spcs2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4988189 ~ 4999810 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016647
TCACCCAGGTCACAGCAAATGAACAGGAAGAAAAGATGGCGGCGAGGAACGGAAAGAATAGTATACTGGAAAAATGGAGGATTGATGAAAAGCCTGTGAAGATTGACAAATGGGATGGTGCAGCTGTGAAGAACTCTCTAGATGATGCAGCTAAGAAGGTTCTGATTGAAAAATATGGCTACCTTGAGAGTTTCAACTTGGTGGATGGACGTCTGTTCATTTGCACAGTCTCCTGCCTTTTCGCCATTGTAGCTTTAATTTGGGATTACCTCCACCCGTTTCCTGAGTCCAAGCCTGTGCTGGCGTGCTGTGTGGTTTCATACTTCATTATGATGGGGATTTTGACCCTGTACACTTCCTACAAAGAGAAGAACATCTTCCTCGTGGCCATGCAGAAGGACCCAGCAGGAATGGACCCAGATCACAATTGGTGTCTGTCCTCCAGCCTAAAAAGGTTTGATGACCAGTACACATTAAGAATGTCCTTCACTGACGGGAAAACCAAGCAGTCGAGGGAAACCGAGTTTACAAAGTCAGTAAGCGTTTTCTTCGACGAGAACGGGACGCTGGTGATGGACCAATACGAAAAATACGTCTCCAAGCTTCACGACACTCTGGCCACAGAGAAGAAGACGAAGTAAACGGTTAGTGGAAATGACGGCACCAGCTTTCAGCGACCCAGCACACACAATTTAATGGTGGCTTTAGTGGACAAAACACTGATGTTTTTCAGGCTAGTTTGAGTTCAGCTCTCAACTGTAATAATATAGAAGTGTTTCGTTTAATTGCTTAtgtttcaaacaaacaaacaaaaaggtccAAATGTCTGTTTTGTTAtccatattttttaaatgtaagatcAGTTGATAAGGCAGACGTTTCTATGATATTCATCATTTAGTGTGTGCAGTATATTTTaggtacatttaaataaatgaaatggtaTGTAATCAGATACAAATGCCAGAGTTTTATGGTGGAAATGTATATTTTCATCAAACAAAAGTCACTTCTTTCTTGGAGGCGATCAATGTTAGTGTTTCCACATTTCACAATGCCTATTGAATAATGTGTCTGATTTACATCTGATTATCAGTATATGTACACATTTTGTCCCGAGAGCCTTAAGTcagtttttcaattttttttcttcctgttttgAATTTTATCTGTTATTTAGGCTTTAAaagacagcaaaaaa
>TCONS_00016648
AGCAAATGAACAGGAAGAAAAGATGGCGGCGAGGAACGGAAAGAATAGTATACTGGAAAAATGGAGGATTGATGAAAAGCCTGTGAAGATTGACAAATGGGATGGTGCAGCTGTGAAGAACTCTCTAGATGATGCAGCTAAGAAGGTTCTGATTGAAAAATATGGCTACCTTGAGAGTTTCAACTTGGTGGATGGACGTCTGTTCATTTGCACAGTCTCCTGCCTTTTCGCCATTGTAGCTTTAATTTGGGATTACCTCCACCCGTTTCCTGAGTCCAAGCCTGTGCTGGCGTGCTGTATCAACACATACTTCATTATGATGGGGATTTTGACCCTGTACACTTCCTACAAAGAGAAGAACATCTTCCTCGTGGCCATGCAGAAGGACCCAGCAGGAATGGACCCAGATCACAATTGGTGTCTGTCCTCCAGCCTAAAAAGGTTTGATGACCAGTACACATTAAGAATGTCCTTCACTGACGGGAAAACCAAGCAGTCGAGGGAAACCGAGTTTACAAAGTCAGTAAGCGTTTTCTTCGACGAGAACGGGACGCTGGTGATGGACCAATACGAAAAATACGTCTCCAAGCTTCACGACACTCTGGCCACAGAGAAGAAGACGAAGTAAACGGTTAGTGGAAATGACGGCACCAGCTTTCAGCGACCCAGCACACACAATTTAATGGTGGCTTTAGTGGACAAAACACTGATGTTTTTCAGGCTAGTTTGAGTTCAGCTCTCAACTGTAATAATATAGAAGTGTTTCGTTTAATTGCTTAtgtttcaaacaaacaaacaaaaaggtccAAATGTCTGTTTTGTTAtccatattttttaaatgtaagatcAGTTGATAAGGCAGACGTTTCTATGATATTCATCATTTAGTGTGTGCAGTATATTTTaggtacatttaaataaatgaaatggtaTGTAATCAGATACAAATGCCAGAGTTTTATGGTGGAAATGTATATTTTCATCAAACAAAAGTCACTTCTTTCTTGGAGGCGATCAATGTTAGTGTTTCCACATTTCACAATGCCTATTGAATAATGTGTCTGATTTACATCTGATTATCAGTATATGTACACATTTTGTCCCGAGAGCCTTAAGTcagtttttcaattttttttcttcctgttttgAATTTTATCTGTTATTTAGGCTTTAAaagacagc

Function

symbol description
spcs2 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to act upstream of or within proteolysis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS2 (signal peptidase complex subunit 2).

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0006508 proteolysis biological_process
GO:0045047 protein targeting to ER biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005787 signal peptidase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03060 Protein export

ZFIN:

id description
ZDB-GENE-050320-32 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to act upstream of or within proteolysis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS2 (signal peptidase complex subunit 2).

Ensembl:

ensembl_id ENSDARG00000042823

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016647 False 1201 mRNA 0.40 5 4988189 4999810
TCONS_00016648 True 1182 mRNA 0.40 5 4988202 4999804

Neighbor

gene id symbol gene type direction distance location
XLOC_008273 rnf169 coding upstream 3112 4969128 ~ 4985077 (+)
XLOC_008272 si:dkey-35i13.1 coding upstream 352370 4632782 ~ 4635819 (+)
XLOC_008271 NA coding upstream 433761 4553896 ~ 4554428 (+)
XLOC_008270 NA coding upstream 456224 4528549 ~ 4531965 (+)
XLOC_008269 NA coding upstream 667174 4313091 ~ 4321015 (+)
XLOC_008275 abcg1 coding downstream 28798 5028608 ~ 5074983 (+)
XLOC_008276 mxf coding downstream 86528 5086338 ~ 5106171 (+)
XLOC_008277 pgm2l1 coding downstream 116369 5116179 ~ 5148793 (+)
XLOC_008278 NA coding downstream 256691 5256501 ~ 5256782 (+)
XLOC_008279 si:ch1073-166e24.4 coding downstream 277951 5277761 ~ 5280100 (+)
XLOC_008463 BX663520.1 misc downstream 16252381 21252191 ~ 21252282 (+)
XLOC_008268 NA non-coding upstream 1033498 3949880 ~ 3954691 (+)
XLOC_008264 NA non-coding upstream 1269806 3682312 ~ 3718383 (+)
XLOC_008289 NA non-coding downstream 468288 5468098 ~ 5471508 (+)
XLOC_008291 NA non-coding downstream 841747 5841557 ~ 5853342 (+)
XLOC_008292 BX088654.1 non-coding downstream 855301 5855111 ~ 5855225 (+)
XLOC_008297 NA non-coding downstream 1159199 6159009 ~ 6160503 (+)

Expression


Co-expression Network