XLOC_008277 (pgm2l1)


Basic Information

Item Value
gene id XLOC_008277
gene name pgm2l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5116179 ~ 5148793 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016652
CAGCAGTGAGTTGACTTGATAGTTTGCAGCCTTCGTCAAATGTGACCTATTTGAATGTGATGACGTCACGCCGTTAATCTTTAATTTCCGAGCACGCTGTGCGCAATAACAGTCAGTCGCACCGGTTTGAAGCAGCTGGATTTGAAGTTCCCCCCTTAGAAGTCTGGATCTGCCGCTGAAATGGGGTCCAACGGAGACCTCAACGCGAACTCACAGTGTCTTAGTGCTACTGGCGACCCGGTGCTGGACAAAGCGGTCAGTCAGTGGATGACCTGGGATAAGaaTCCTCTGACGCGGGAACAAATCGAGTCTTTGGTGCAAGAGGGTCGTGTGGTGGAGCTCAGGAGGAGATTGTGCTCCAGGATGACGTTTGGAACCGCTGGATTAAGAGCCGCGATGGGAGCAGGGTTTGCTCGCATTAATGACCTGACTATCATTCAGTCTACACAGggaTTGTACAAATACTTGGCCAAATGTTTCCCTGACCTGAAAACGAGAGGGCTGGTGGTTGGTTATGACACTCGTGCCCAAGCAAGCAGTGGCTGCACCAGTGAACGACTTGCAAAGTTGACTGCCGCTGTTATGCTTTGTAAAGATGTTCCTGTCTATCTGTTCTCTACGTATGTGCCTACCCCATTTGTGCCGTATGCTGTGATGAAGTATGGAGCTGCAGCTGGAGTCATGATCACTGCTTCTCATAACAGAAAAGAGGACAATGGATACAAGGTTTATTGGCACAATGGCGCACAGATAGCCTCGCCGCATGATAAGGAGATCTTACATTGCATTGAGGAGAGTGCTGAACCCTGGGCTGAGTCCTGGAATGAGGACCTGGTTGAGAACAGCCTGCTAAAGCGAGACCCACTGGAGGACGTCTGCCACTGGTACATGGAAGAGCTAAACACTCTCTGCTTCCACAGAGAACTTAACGCAAAGTCTCCTCTGAAGTTTGTCCATTCATCATTCCATGGTGTGGGTCACAACTATGTCCAGAGGGCTTTTCAGCAGTTTGGTTTCCCGCCGCCAATTCCTGTCCCAGAGCAGAAAGATCCAGATCCAGATTTTTCCACAGTCAGCTGTCCTAACCCAGAGGAAGGAGAGTCAGTCTTAGAGCTTTCTCTTCGTTTGGCTGAAAGAGAAAAAGCCCGTATTGTTGTAGCCACAGACCCTGATGCAGATCGCTTGGCTGTTGCAGAGCAGAATGATAATTGCGGATGGAAAGTGTTCACAGGGAATGAATTGGCAGCATTGCTTGGCTGGTGGATGTTGTTTAACTGGAAGGAAGCACACCCTGACCCAGCAGACACTGAGAGAGTGTATATGCTGGCCACCACTGTCTCATCCAAAATACTCGAGGCCTTTGCACGCATCGAGGGCTTCCATTTTGAGGAAACATTGCCTGGCTTTAAATGGATTGGAAACAGAATCCATGAACTAAAAAAAGCAGGAAAGGAAGTAATTTTTTCCTTCGAAGAATCCATTGGGTTTTTGTGTGGGAACATGGTCCTTGATAAGGATGGAGTCAGTACAGCAGCTGTTGTGGCTGAAATGGCGTCTTATCTACACACCAAAAACCTTTCCTTGAACCAACAACTATGTAACATCTACGAAATATACGGGTATCACATTTCTCGAACGTCCTATGTCCTCTGCAATGACCCACCCACTATTCATAGAATTTTTAGTCGCCTACGCAACTTTGGAGGCCAGGGTGTGTATCCAACGTCATGTGGCGATTACTGCATCACACACATCCGAGATGTGACCACTGGTTACGACAGCAGTCAGCCTGACAAGAAATGTGTCCTTCCATTGTCAAAAAGTAGCCAAATGCTCACCTTCACGTTTCAGAATGGCATCGTTGCCACACTTAGGACCAGTGGAACCGAGCCAAAGATCAAGTATTACACAGAATTCTGCGCATCACCAGGAGAacgTGATATCTCTAGCCTGGACGAGGAGTTAAGAAAAGTTGCAGCTGCCCTGGTTGAAGAGTTTCTTGAACCGGACAAGAACGATCTCCTTGGCAGATCAGTATAGCTTTATTTGTCATGGGCAACTCCAGTAAAAACCTGTCCCAAAGACCTGTCAGCAAACCGTCCTGTGAATGTTGTTTTAGCACTGTGAAATTAGAATCACAATCAACTCATGGCTCTCAAAAAGAAATGAAAACTGATCATTCATTTGGTGGATTATATATGGCAAGAAATATTGCCGtcatctttttcttttcttttttattgttatttatttatcacaGTGAAACAAGTTTATCCCAGCAAGGAAAATCTCcaatgcttttatttcagttcagtacCCGATGCTGCATTATTACTATCAATTCTGTTTTATTAGGCCCGCCAGATCACTCATTTGTAGAAATTATTTTAACCCCTTGTCTGTTTCTCAGATGTGTAGCTGAGAGCTACTGCTGCTAAATTTTAAAGCTCTGTGAGCATGTATGCGTGTTGTGCTCTCATAAACCTGTGtccatattctaaaaaaaaaagactcttaTATGTTTTGATGCTTGTACTCTTTATGTAGTGTGTAATATGCATTGATAATCAGGAGTCAAGATGGGCAGCATCCTGTTGGTCCCTTTAAGTTTTGCTGGCTTTGATATGCTGGATACGCACAGGGTAAGTTAATGAATGGAAGAGAGAATGGACGTTTTGTTTTCGAAGCTTCTGATTTTTGCTGTACATAGCTTAATAGGCATATTTGAATTTGTGTGGGTTATATATACACATCCTTCAAGTTTCAGTTAATTGTAAGCGGCATTCAGGTTAAGCAAGGCGTTTCACTCTACTGATAAATAAAGACCAGAAGGATTTTGATCCTAAACAAGAACTTATAAGATCATTTAGAAAAGAGAGGCTCATCAAACTGTTTGAAAGAAGCCAGTTATTTTGCCAGTTTCTTcactaaaaaaatataaataaataaaaattaagtttgtCATTGTCTTAACAATGACTTTGTGCCATTTAATAACCTTCTTGCGATTTTATTGTGGCACTAAGTGCATTTCAAACATCCTCAGTGCATTGTTGATTCAAGATTTATTCAATGAAATGAAATGTGCAGTATATTATTGTTTTGAAGAGTGATACATTGGCATTTTACCCTTTCACTGGTCGAAAGGCTCAAATACAGCGTACCTTATTTTTGAGGAAGTTATGAGAAAACCAAAGGAAGAGATGTTTTGTAGAGTGTAACATGTACCAGTTTCTTTTTTTGCCTTGTTTCAAGTACACTATTTATTTGCAGTGCAACTGTGACATTCCTTAAATGTATATTATGTGTACATCCCTCTACAAATAAATTGCTGTATTAGTAA
>TCONS_00016653
AAACGAATGAGAACAATTTAGCGCCCCCTTTATGGCTAAGTGGAACgagACTTGCAAAGTTGACTGCCGCTGTTATGCTTTGTAAAGATGTTCCTGTCTATCTGTTCTCTACGTATGTGCCTACCCCATTTGTGCCGTATGCTGTGATGAAGTATGGAGCTGCAGCTGGAGTCATGATCACTGCTTCTCATAACAGAAAAGAGGACAATGGATACAAGGTTTATTGGCACAATGGCGCACAGATAGCCTCGCCGCATGATAAGGAGATCTTACATTGCATTGAGGAGAGTGCTGAACCCTGGGCTGAGTCCTGGAATGAGGACCTGGTTGAGAACAGCCTGCTAAAGCGAGACCCACTGGAGGACGTCTGCCACTGGTACATGGAAGAGCTAAACACTCTCTGCTTCCACAGAGAACTTAACGCAAAGTCTCCTCTGAAGTTTGTCCATTCATCATTCCATGGTGTGGGTCACAACTATGTCCAGAGGGCTTTTCAGCAGTTTGGTTTCCCGCCGCCAATTCCTGTCCCAGAGCAGAAAGATCCAGATCCAGATTTTTCCACAGTCAGCTGTCCTAACCCAGAGGAAGGAGAGTCAGTCTTAGAGCTTTCTCTTCGTTTGGCTGAAAGAGAAAAAGCCCGTATTGTTGTAGCCACAGACCCTGATGCAGATCGCTTGGCTGTTGCAGAGCAGAATGATAATTGCGGATGGAAAGTGTTCACAGGGAATGAATTGGCAGCATTGCTTGGCTGGTGGATGTTGTTTAACTGGAAGGAAGCACACCCTGACCCAGCAGACACTGAGAGAGTGTATATGCTGGCCACCACTGTCTCATCCAAAATACTCGAGGCCTTTGCACGCATCGAGGGCTTCCATTTTGAGGAAACATTGCCTGGCTTTAAATGGATTGGAAACAGAATCCATGAACTAAAAAAAGCAGGAAAGGAAGTAATTTTTTCCTTCGAAGAATCCATTGGGTTTTTGTGTGGGAACATGGTCCTTGATAAGGATGGAGTCAGTACAGCAGCTGTTGTGGCTGAAATGGCGTCTTATCTACACACCAAAAACCTTTCCTTGAACCAACAACTATGTAACATCTACGAAATATACGGGTATCACATTTCTCGAACGTCCTATGTCCTCTGCAATGACCCACCCACTATTCATAGAATTTTTAGTCGCCTACGCAACTTTGGAGGCCAGGGTGTGTATCCAACGTCATGTGGCGATTACTGCATCACACACATCCGAGATGTGACCACTGGTTACGACAGCAGTCAGCCTGACAAGAAATGTGTCCTTCCATTGTCAAAAAGTAGCCAAATGCTCACCTTCACGTTTCAGAATGGCATCGTTGCCACACTTAGGACCAGTGGAACCGAGCCAAAGATCAAGTATTACACAGAATTCTGCGCATCACCAGGAGAacgTGATATCTCTAGCCTGGACGAGGAGTTAAGAAAAGTTGCAGCTGCCCTGGTTGAAGAGTTTCTTGAACCGGACAAGAACGATCTCCTTGGCAGATCAGTATAGCTTTATTTGTCATGGGCAACTCCAGTAAAAACCTGTCCCAAAGACCTGTCAGCAAACCGTCCTGTGAATGTTGTTTTAGCACTGTGAAATTAGAATCACAATCAACTCATGGCTCTCAAAAAGAAATGAAAACTGATCATTCATTTGGTGGATTATATATGGCAAGAAATATTGCCGtcatctttttcttttcttttttattgttatttatttatcacaGTGAAACAAGTTTATCCCAGCAAGGAAAATCTCcaatgcttttatttcagttcagtacCCGATGCTGCATTATTACTATCAATTCTGTTTTATTAGGCCCGCCAGATCACTCATTTGTAGAAATTATTTTAACCCCTTGTCTGTTTCTCAGATGTGTAGCTGAGAGCTACTGCTGCTAAATTTTAAAGCTCTGTGAGCATGTATGCGTGTTGTGCTCTCATAAACCTGTGtccatattctaaaaaaaaaagactcttaTATGTTTTGATGCTTGTACTCTTTATGTAGTGTGTAATATGCATTGATAATCAGGAGTCAAGATGGGCAGCATCCTGTTGGTCCCTTTAAGTTTTGCTGGCTTTGATATGCTGGATACGCACAGGGTAAGTTAATGAATGGAAGAGAGAATGGACGTTTTGTTTTCGAAGCTTCTGATTTTTGCTGTACATAGCTTAATAGGCATATTTGAATTTGTGTGGGTTATATATACACATCCTTCAAGTTTCAGTTAATTGTAAGCGGCATTCAGGTTAAGCAAGGCGTTTCACTCTACTGATAAATAAAGACCAGAAGGATTTTGATCCTAAACAAGAACTTATAAGATCATTTAGAAAAGAGAGGCTCATCAAACTGTTTGAAAGAAGCCAGTTATTTTGCCAGTTTCTTcactaaaaaaatataaataaataaaaattaagtttgtCATTGTCTTAACAATGACTTTGTGCCATTTAATAACCTTCTTGCGATTTTATTGTGGCACTAAGTGCATTTCAAACATCCTCAGTGCATTGTTGATTCAAGATTTATTCAATGAAATGAAATGTGCAGTATATTATTGTTTTGAAGAGTGATACATTGGCATTTTACCCTTTCACTGGTCGAAAGGCTCAAATACAGCGTACCTTATTTTTGAGGAAGTTATGAGAAAACCAAAGGAAGAGATGTTTTGTAGAGTGTAACATGTACCAGTTTCTTTTTTTGCCTTGTTTCAAGTACACTATTTATTTGCAGTGCAACTGTGACATTCCTTAAATGTATATTATGTGTACATCCCTCTACAAATAAATTGCTGTATTAGTAA

Function

symbol description
pgm2l1 Predicted to enable intramolecular transferase activity, phosphotransferases and metal ion binding activity. Predicted to act upstream of or within glucose metabolic process. Orthologous to human PGM2L1 (phosphoglucomutase 2 like 1).

GO:

id name namespace
GO:0071704 organic substance metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function

KEGG:

id description
ko00500 Starch and sucrose metabolism

ZFIN:

id description
ZDB-GENE-041008-205 Predicted to enable intramolecular transferase activity, phosphotransferases and metal ion binding activity. Predicted to act upstream of or within glucose metabolic process. Orthologous to human PGM2L1 (phosphoglucomutase 2 like 1).

Ensembl:

ensembl_id ENSDARG00000014704

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016652 False 3343 mRNA 0.43 14 5116179 5148793
TCONS_00016653 True 2835 mRNA 0.41 12 5132439 5148793

Neighbor

gene id symbol gene type direction distance location
XLOC_008276 mxf coding upstream 10008 5086338 ~ 5106171 (+)
XLOC_008275 abcg1 coding upstream 41196 5028608 ~ 5074983 (+)
XLOC_008274 spcs2 coding upstream 116369 4988189 ~ 4999810 (+)
XLOC_008273 rnf169 coding upstream 131102 4969128 ~ 4985077 (+)
XLOC_008272 si:dkey-35i13.1 coding upstream 480360 4632782 ~ 4635819 (+)
XLOC_008278 NA coding downstream 107708 5256501 ~ 5256782 (+)
XLOC_008279 si:ch1073-166e24.4 coding downstream 128968 5277761 ~ 5280100 (+)
XLOC_008280 or121-1 coding downstream 132065 5280858 ~ 5284248 (+)
XLOC_008281 or122-1 coding downstream 138910 5287703 ~ 5289199 (+)
XLOC_008282 or121-1 coding downstream 144992 5293785 ~ 5295023 (+)
XLOC_008463 BX663520.1 misc downstream 16103398 21252191 ~ 21252282 (+)
XLOC_008271 NA non-coding upstream 561751 4553896 ~ 4554428 (+)
XLOC_008270 NA non-coding upstream 584214 4528549 ~ 4531965 (+)
XLOC_008269 NA non-coding upstream 795164 4313091 ~ 4321015 (+)
XLOC_008268 NA non-coding upstream 1161488 3949880 ~ 3954691 (+)
XLOC_008264 NA non-coding upstream 1397796 3682312 ~ 3718383 (+)
XLOC_008289 NA non-coding downstream 319305 5468098 ~ 5471508 (+)
XLOC_008291 NA non-coding downstream 692764 5841557 ~ 5853342 (+)
XLOC_008292 BX088654.1 non-coding downstream 706318 5855111 ~ 5855225 (+)
XLOC_008297 NA non-coding downstream 1010216 6159009 ~ 6160503 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_01989763_02003920 PGM2L1 coding CI01000092 null 1989763 ~ 2004130 (+)