XLOC_008278


Basic Information

Item Value
gene id XLOC_008278
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5256501 ~ 5256782 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018755
TACGCTCAGTATAGCTGAATCTTGTGAGGATTGGAGTTAATTCTTGACTACTCTTTAAAGAATATTGTAGATTCAAACATAGTCAATCGCAGACAACGGTTAAAACTGGGTAGGAAACAGACAGACGAACGGGGTCCAGCAGTCAATCCTCTcagtcctgagcacagacagacacacatgagCAAACACAACCAACTGACAAAGGAACATAGAAGCGTCGCCCAGAAATAGGCAcgataatgagcctcagctgaCGAGCTAATCAAAACAGCTGAGTATCGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018755 True 282 lncRNA 0.44 1 5256501 5256782

Neighbor

gene id symbol gene type direction distance location
XLOC_008277 pgm2l1 coding upstream 107708 5116179 ~ 5148793 (+)
XLOC_008276 mxf coding upstream 150330 5086338 ~ 5106171 (+)
XLOC_008275 abcg1 coding upstream 181518 5028608 ~ 5074983 (+)
XLOC_008274 spcs2 coding upstream 256691 4988189 ~ 4999810 (+)
XLOC_008273 rnf169 coding upstream 271424 4969128 ~ 4985077 (+)
XLOC_008279 si:ch1073-166e24.4 coding downstream 20979 5277761 ~ 5280100 (+)
XLOC_008280 or121-1 coding downstream 24076 5280858 ~ 5284248 (+)
XLOC_008281 or122-1 coding downstream 30921 5287703 ~ 5289199 (+)
XLOC_008282 or121-1 coding downstream 37003 5293785 ~ 5295023 (+)
XLOC_008283 or122-2 coding downstream 42622 5299404 ~ 5300815 (+)
XLOC_008463 BX663520.1 misc downstream 15995409 21252191 ~ 21252282 (+)
XLOC_008271 NA non-coding upstream 702073 4553896 ~ 4554428 (+)
XLOC_008270 NA non-coding upstream 724536 4528549 ~ 4531965 (+)
XLOC_008269 NA non-coding upstream 935486 4313091 ~ 4321015 (+)
XLOC_008268 NA non-coding upstream 1301810 3949880 ~ 3954691 (+)
XLOC_008264 NA non-coding upstream 1538118 3682312 ~ 3718383 (+)
XLOC_008289 NA non-coding downstream 211316 5468098 ~ 5471508 (+)
XLOC_008291 NA non-coding downstream 584775 5841557 ~ 5853342 (+)
XLOC_008292 BX088654.1 non-coding downstream 598329 5855111 ~ 5855225 (+)
XLOC_008297 NA non-coding downstream 902227 6159009 ~ 6160503 (+)
XLOC_008299 CU655863.1 non-coding downstream 1302268 6559050 ~ 6559185 (+)

Expression


Co-expression Network