XLOC_008279 (si:ch1073-166e24.4)


Basic Information

Item Value
gene id XLOC_008279
gene name si:ch1073-166e24.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5277761 ~ 5280100 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016654
TGTTCTATTAAATaggtttttcattcattaatattgtatatTAGATAGGTATATAATCTTGAGGTAAATGGACTCTGTTTACATGGTTTTTCCAAATGATTTTTCTTTAAGCTGaggagatttttatttatttatttatttatcttttgcaTTGGATGATTTCCTCTGCATGAAATGTGTATGTAAGGAAGACACCTTTCTTCAATTGTTTGAAACAAACCGTTAATATGGAAAACAGTGCAAATTTTACAACTATCATACTGACTGGATATCTTCAACTGGATTTCAACATGAAGTActtgttgttttttgtattaaCTGTGCTGTATTTGACAGTGGTTTTTGCCAACAGCTTTCTTATTGGTGTCATCTTTTCAGCAAAAACCCTTCATAAGCCAATGTACCTGCTTCTCTGTAGTTTGTTTGTTAATGAACTGTATGGCAGCACAGCTTTATTTCCTTCACTTCAGGTTAACTTAATTTTGAATAGCAACGAAATTTCTCTTATATATTGTTATTTACAGATTTTCTGCTTATACACATATGCAATGATAGAATTTTGTAACTTAGCAGTCATGTCTTTTGATAGATATGTGTCGATCTGTTATCCATTACAGTATAACAGAATCATGACCCCTTTTAGAGTGGGTTTGTTAATTGCTTTGGTTTGGACCTACTGTTTCATTcaatttttaatacttttgtCTTTTAATTTTAAGTTGCAACTGTGTGGAAATGTAATGGAGAAAGTGTGGTGTGACAACTACTTACTTGTGAAACTGGCTTGTTTTAAAACCTCTCTGAATAATACTTACGGTATTTACGTTAATGTGATGACAGCACTGATCCCATTGGCGctcattttttattcatatacaAGAATTATCAAAATTTGCTTGAGTTTTTCTAAAGAAGCTAAGAAGAAGGCTCTAAGCACCTGCACCCCACACATTATATCTCTGTTAAACTTTTCTTTGGGCTGCTTCTTTGAAACACTTCAAAGCAGGTTTGATAATATTAGAATGCCAGCTCTGTTACGTGTAAtagtttcagtttattttttgatGTGTCCGCCACTGCTGAACCCTATAATGTATGGTTTAAGACTGAAAAATATCAGACTAGTATGTAAAAATTTGATGGTATCAAAGGTTGGTTTAACATAACACAGATGTATTTGGGTTTTTGATGTGCTTTAACCACCATCATTATGGTGTTTAATTGCATTTTaagaatgttttatatattaacctaccatgttaaataatttataaagatATATTTGCATATGATAAATCAGTTCCTTTTTGCTTCATATGAAAATGGTAGCAAATAGTACAAATGTTTGTAGTGAAACTGTTTTTCAAAGATATATCATTTTgacaattatattttttctttaacctTCCTGTCATGTTTGGGTCGAttctgaccgatttacaacttaaaacactcaTAAAACTTGTGTTTAACACCTGAGTGTCTCAAAgccttatgatatcctccacactgTGCACTTGAAAATATAGAAGTGATGAACACCCCTTTCACTGAATTTTCAGTATTTAAATCAGCGTTGTTACACCTGTGGCGTTCCCGGTCAAAAGGGACCACCATATGAAATCAATGGGTATCAAGACTATATTTATCCATCAGACATCCCTATACACACCACACCCCAACTCACTTCCTgacttactcacacacacacacacacacatattttagaCCCCTCTGCAGGTAttcaacccctaaacccaaccgtcattgggggataagcaattttactaaattgtatgaatgagattgtacaaatttatacgaattcaccattaaattaaaaagttacgaattgtcttGAGatgtctttctttttctttctttctttctttctttctttctttctttctttctttctttctttctttttatctttctttccttttttcttttttctttcttttttctttattcattctttctttctttttttcttttatctttttttctttgcttttttctttctttctttctttctttttttctttccttttttctttctttctttctttttctttctttctttctttctttctttctttctttctttcagctTAGCTGCAACTATTTCATTGGACTAGAACATTAccatctcactcaaaaataacCGAAGTATAACTAGTGCTAATGCTGTGGCCTTAATCCCCATCTATACCCTCAATCACATAGTACAAAGGAAAGGatgctgttttgtttgtgctttgctggttgataaatcattcagattCATTAAAATTTCAATTTGTTTGGTCAGACCCTGTAATTGTTATTTTAGAGAGC
>TCONS_00018883
tcttttgcaTTGGATGATTTCCTCTGCATGAAATGTGTATGTAAGGAAGACACCTTTCTTCAATTGTTTGAAACAAACCGTTAATATGGAAAACAGTGCAAATTTTACAACTATCATACTGACTGGATATCTTCAACTGGATTTCAACATGAAGTActtgttgttttttgtattaaCTGTGCTGTATTTGACAGTGGTTTTTGCCAACAGCTTTCTTATTGGTGTCATCTTTTCAGCAAAAACCCTTCATAAGCCAATGTACCTGCTTCTCTGTAGTTTGTTTGTTAATGAACTGTATGGCAGCACAGCTTTATTTCCTTCACTTCAGGTTAACTTAATTTTGAATAGCAACGAAATTTCTCTTATATATTGTTATTTACAGATTTTCTGCTTATACACATATGCAATGATAGAATTTTGTAACTTAGCAGTCATGTCTTTTGATAGATATGTGTCGATCTGTTATCCATTACAGTATAACAGAATCATGACCCCTTTTAGAGTGGGTTTGTTAATTGCTTTGGTTTGGACCTACTGTTTCATTcaatttttaatacttttgtCTTTTAATTTTAAGTTGCAACTGTGTGGAAATGTAATGGAGAAAGTGTGGTGTGACAACTACTTACTTGTGAAACTGGCTTGTTTTAAAACCTCTCTGAATAATACTTACGGTATTTACGTTAATGTGATGACAGCACTGATCCCATTGGCGctcattttttattcatatacaAGAATTATCAAAATTTGCTTGAGTTTTTCTAAAGAAGCTAAGAAGAAGGCTCTAAGCACCTGCACCCCACACATTATATCTCTGTTAAACTTTTCTTTGGGCTGCTTCTTTGAAACACTTCAAAGCAGGTTTGATAATATTAGAATGCCAGCTCTGTTACGTGTAAtagtttcagtttattttttgatGTGTCCGCCACTGCTGAACCCTATAATGTATGGTTTAAGACTGAAAAATATCAGACTAGTATGTAAAAATTTGATGG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-386 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000105797

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016654 False 2340 mRNA 0.32 1 5277761 5280100
TCONS_00018883 True 1001 lncRNA 0.34 1 5277903 5278903

Neighbor

gene id symbol gene type direction distance location
XLOC_008278 NA coding upstream 20979 5256501 ~ 5256782 (+)
XLOC_008277 pgm2l1 coding upstream 128968 5116179 ~ 5148793 (+)
XLOC_008276 mxf coding upstream 171590 5086338 ~ 5106171 (+)
XLOC_008275 abcg1 coding upstream 202778 5028608 ~ 5074983 (+)
XLOC_008274 spcs2 coding upstream 277951 4988189 ~ 4999810 (+)
XLOC_008280 or121-1 coding downstream 758 5280858 ~ 5284248 (+)
XLOC_008281 or122-1 coding downstream 7603 5287703 ~ 5289199 (+)
XLOC_008282 or121-1 coding downstream 13685 5293785 ~ 5295023 (+)
XLOC_008283 or122-2 coding downstream 19304 5299404 ~ 5300815 (+)
XLOC_008284 or113-1 coding downstream 41512 5321612 ~ 5323546 (+)
XLOC_008463 BX663520.1 misc downstream 15972091 21252191 ~ 21252282 (+)
XLOC_008271 NA non-coding upstream 723333 4553896 ~ 4554428 (+)
XLOC_008270 NA non-coding upstream 745796 4528549 ~ 4531965 (+)
XLOC_008269 NA non-coding upstream 956746 4313091 ~ 4321015 (+)
XLOC_008268 NA non-coding upstream 1323070 3949880 ~ 3954691 (+)
XLOC_008289 NA non-coding downstream 187998 5468098 ~ 5471508 (+)
XLOC_008291 NA non-coding downstream 561457 5841557 ~ 5853342 (+)
XLOC_008292 BX088654.1 non-coding downstream 575011 5855111 ~ 5855225 (+)
XLOC_008297 NA non-coding downstream 878909 6159009 ~ 6160503 (+)
XLOC_008299 CU655863.1 non-coding downstream 1278950 6559050 ~ 6559185 (+)

Expression


Co-expression Network