XLOC_008283 (or122-2)


Basic Information

Item Value
gene id XLOC_008283
gene name or122-2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5299404 ~ 5300815 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016658
GTTTCTCTTATGATGACTTGTCTTCTAAATAGTCATTTTTATAATTGTTAGATTGATAGATAGTCTTGACTGCAGCTGCTACTTTTTCTTCTGCTCATGTATTTATTACCAACTTTCCACTGTCAATcttcattcttcaaaacatatcattagtaaaatgtcattttcaaaaGTTGTTCATTGATTTTGCAACTTTAACAGGTGTTCATTTGGATTTTATCTCCTTTGTGAATGATTTGTATACATGGTGATTGTCAGAGCTGTTAATTTGTCATCCATGGATAATTCAACATATTTCACAACGGTTATTTTGACTGGCTACATTGATATTGGTGATATTAagtatttgtgttttgttgttttgatcTTGTTGTTTGCTGCGATCATTGTAGCTAATCTGTTTATTATTGGAATAATATATAAGGAAAAGTCTTTGCATGAAcccatgtatgtttttttatgtagcCTGTGTGCAAATCAACTGTGCGGCAGCTTTGCTTTATTCCCGTTTGTTTTAGGCAATATGCTACGGTCAAAAACCCCAGAAGTTCCTCTCACTGTTTGTCATGCTCAGATATTTGCTTTATACTCTTATGCACAAGTAGAATTCTGTAACTTAGCCATGATGTCTTATGACCGGTATGTAGCTATCTGTCACCCTTTGGAATATCACAGAATCATGTCTCCTGCCAGGACGATGACATTGATTGCTCTTGGATGGTCGCTAGAAATTATGATATtatccttttctttttctgttaatGTACAGCTCAAATTTTGTGGAAATGTTCTGGATAAAGTGTGGTGTGACCAGTACATGCTTGTGAAACTGGCATGCTCAGACACGACACCAAACAACATCATCGGCATTACTGGTATCCCACTTGCCATTGGTCCACCActgctaataatttttttctcataTGCAAAAATTTTAAGAGTGTGCCTAAAGTTCACAAGACAGAAGGCCAAAAAGTCTCTGTACACATGTTCTCTGCATCTTATCACACTCCTGAATTTCACTGTTGGTTGTTCGTTTGAACTGATCCAAAGCAGATTTGGTAAGCTTCCCATTCCTGCTGTAGTGCGTGTGATTCTCTCACTTTATTTCCTAGTGTGTCCACCACTGATCAATCCTATCATGTATGGCGTAAGTCTTACTAATATAAAaaaggcactcaaaaaatgtattGGCGTGTAGGCTAGAAAAATATACTGTACAATTTAGGAAATTCTTTAAAGGCACAAAGAACTTGTATGTATTTataacaattgttttatttttgtaaataatatgtGGTAAATGTTTGATTATTATATAACATGGAACAACATATTGTGTTTcgacatattctgcatgatctttcagtgtacttttcaaaacccaataaaaatataaaaggtaCCTTTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-192 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000087968

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016658 True 1412 mRNA 0.35 1 5299404 5300815

Neighbor

gene id symbol gene type direction distance location
XLOC_008282 or121-1 coding upstream 4381 5293785 ~ 5295023 (+)
XLOC_008281 or122-1 coding upstream 10205 5287703 ~ 5289199 (+)
XLOC_008280 or121-1 coding upstream 15156 5280858 ~ 5284248 (+)
XLOC_008279 si:ch1073-166e24.4 coding upstream 19304 5277761 ~ 5280100 (+)
XLOC_008278 NA coding upstream 42622 5256501 ~ 5256782 (+)
XLOC_008284 or113-1 coding downstream 20797 5321612 ~ 5323546 (+)
XLOC_008285 or113-2 coding downstream 32085 5332900 ~ 5334256 (+)
XLOC_008286 si:ch1073-22e3.1 coding downstream 38241 5339056 ~ 5341379 (+)
XLOC_008287 CABZ01018874.1 coding downstream 42371 5343186 ~ 5344504 (+)
XLOC_008288 or112-1 coding downstream 59592 5360407 ~ 5364508 (+)
XLOC_008463 BX663520.1 misc downstream 15951376 21252191 ~ 21252282 (+)
XLOC_008271 NA non-coding upstream 744976 4553896 ~ 4554428 (+)
XLOC_008270 NA non-coding upstream 767439 4528549 ~ 4531965 (+)
XLOC_008269 NA non-coding upstream 978389 4313091 ~ 4321015 (+)
XLOC_008268 NA non-coding upstream 1344713 3949880 ~ 3954691 (+)
XLOC_008289 NA non-coding downstream 167283 5468098 ~ 5471508 (+)
XLOC_008291 NA non-coding downstream 540742 5841557 ~ 5853342 (+)
XLOC_008292 BX088654.1 non-coding downstream 554296 5855111 ~ 5855225 (+)
XLOC_008297 NA non-coding downstream 858194 6159009 ~ 6160503 (+)
XLOC_008299 CU655863.1 non-coding downstream 1258235 6559050 ~ 6559185 (+)

Expression


Co-expression Network