XLOC_008284 (or113-1)


Basic Information

Item Value
gene id XLOC_008284
gene name or113-1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5321612 ~ 5323546 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016659
GACAAGACTTCTCGTCTGGAAATATAAAGGGTTTCTAATTAGCAATGCAATGTGGAGAGCACAGCTTGATGATTGTGGGTAGATTTAGCATGTCTTGTTTACTCCAATATACACTTTAAGCTTGTCATACcgtggttttatttttttacttttaactaAATGCATGTGAAGTTTTTTCTTCTGCGTTCATTGGCACAACACAATTGATATGACACTTGATTAACCCCTTTGTAAATTCTTTTGTATTGTGTaaaaaagcttcttttttttaagcatgaaggATCTTACCGCAAAAAATACCTCATTCACTGAGTTCAGATTAAATGGTTTCTACAGCCTTGGAGAATGGAGGCCTTTTTTATTTATCCCATTCTTTCTGATGTTTATGTTGGCAATCATAGCAAATTCCATTCTcatatatttaatcaaaactCAGAGGTCTCTGCATTCTCCGATGTATGTATTAATAGGTGTCATGGCAGTTGTAGACTTGATTATGCCTTTATCTTTTGTTCCTAACATGCTTCTTAGCTTTCTATTCAACTGGAGTGGGATATCTCTAACTGGTTGTTTGATACAAATGTTTGGCATTCATTTTGTGGGATCATTTCAAGTTACTCTGCTTTTTTGGATGGCGCTGGATCGTTATTTTGCAATATGCAAACCTCTTTATTATCATAAATACATGGAAATGTCTAACTTCCTTAAGTTTGTGTTTGCACCAGTAATCAGAAATGCACTCCTGATTGTCACCATGGTCTCGCTGGCTGGAAGACTGTCATTTTGTGCAACAAATGTAATTGATCACTCTTTTTGTGAGCACATGGCATTGGTTCAGTTAGCATGTGGAGATATATCTGCTAATAATATTGTAGGTCTTCTGTCAGCTTTCCTTATAGCGGCTACAGATTGCATTCTTATTACTGTCTCATATATTGTCATGTTTTTCTATGTTTTGAAATCTGGAACGGCTAACATGAAGGCTTTAAACACTTGTGTTACTCACTTAATTGTGTTGTCAATTAGTTTGACGTCTGCCTTGACTGCATTTTTGTCATACAGAATACGTAACAATCTTTCTTCTAACAATCGTATATTTATAAGCACAGTGTACTTATTTTTTCCAAGTTGTCTACATCCGTTAATCTATGGATGGAGAACTAAAGAAATAAGACAAACATTTCTGCAGTTTATACACAAAGCACATATATTTCCTTTGGAAAAATAACGGATGCATaattatactgtgaaaatggacaattattttaaacagtgaATTGATTATGCACTATATCGATTATACAGAGCAAACGTACACATACAATCTGttgttccagcctgatctcacgtgaaaatgtaagtattttacattttgtcagtttgttaggggctaattcgtacgaattaagtacgaaattgtacgatttttaaaaaggagacatGGCACCCGaccgtcattggggaatgagcaaatcgtactaaattgtaggaataagattgtacgaattcatgcgaattagccactaaatcaaaaagttacgaattgccgtgagattgcgttggttgtTCTGTTTATAAAAAGCATAAATGTTTTTGTAAGAACATGTAAAACATCTTAATAGGGATAGGAACCTGTACAAtgatgtaaaaatgtaatgtttttcttCACATTAGTAAATGATGGCTTATTTGAATTCACGAACACTAATCAAAACACAAGCTGTATGATGTCTGTAATGCTCATATACTAAGTAAACATACTATTACTCTATTGAGTCTTAATTTCATACCTACCATATAGGCCTTCTGAACAATGCTAACAAAAATCTATACTGTATTTTACAGCATGTGATATAAGCAGAATATTTAAGTTCTTGAGTAAACGGTCAACATTGTAAGATTTTCTGTCCATAAACAATTAAACCGATCCACtga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-1 Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000105671

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016659 True 1935 mRNA 0.34 1 5321612 5323546

Neighbor

gene id symbol gene type direction distance location
XLOC_008283 or122-2 coding upstream 20797 5299404 ~ 5300815 (+)
XLOC_008282 or121-1 coding upstream 26589 5293785 ~ 5295023 (+)
XLOC_008281 or122-1 coding upstream 32413 5287703 ~ 5289199 (+)
XLOC_008280 or121-1 coding upstream 37364 5280858 ~ 5284248 (+)
XLOC_008279 si:ch1073-166e24.4 coding upstream 41512 5277761 ~ 5280100 (+)
XLOC_008285 or113-2 coding downstream 9354 5332900 ~ 5334256 (+)
XLOC_008286 si:ch1073-22e3.1 coding downstream 15510 5339056 ~ 5341379 (+)
XLOC_008287 CABZ01018874.1 coding downstream 19640 5343186 ~ 5344504 (+)
XLOC_008288 or112-1 coding downstream 36861 5360407 ~ 5364508 (+)
XLOC_008289 NA coding downstream 144552 5468098 ~ 5471508 (+)
XLOC_008463 BX663520.1 misc downstream 15928645 21252191 ~ 21252282 (+)
XLOC_008278 NA non-coding upstream 64830 5256501 ~ 5256782 (+)
XLOC_008271 NA non-coding upstream 767184 4553896 ~ 4554428 (+)
XLOC_008270 NA non-coding upstream 789647 4528549 ~ 4531965 (+)
XLOC_008269 NA non-coding upstream 1000597 4313091 ~ 4321015 (+)
XLOC_008268 NA non-coding upstream 1366921 3949880 ~ 3954691 (+)
XLOC_008291 NA non-coding downstream 518011 5841557 ~ 5853342 (+)
XLOC_008292 BX088654.1 non-coding downstream 531565 5855111 ~ 5855225 (+)
XLOC_008297 NA non-coding downstream 835463 6159009 ~ 6160503 (+)
XLOC_008299 CU655863.1 non-coding downstream 1235504 6559050 ~ 6559185 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location