XLOC_008294 (sh3bgr)


Basic Information

Item Value
gene id XLOC_008294
gene name sh3bgr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5923851 ~ 5958803 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016667
GCCACATGATGCTGATGCACCGGGGACAAAAATAGACAGAGTCGGGGCTGCTGCGCCGTGTGCTTTCCAGTCAAAGCGAGGAGGATCGCTGTGTCTTTAAATACCCTTTTTACAGCTCATTTAATATCGCTTATCCACAAAATGGTCATTAAAGTCTTCCTGGCATCCTCCTCGGGATCGACGGCGATCAAAAAGAAGCAGCAAGATGTTGTCGGCTTTCTTGAGGCTCTTAAAATCGATTACGCACAGCTTGACATTGCTTCAAATGAGGATAACCGAGCGTGGATGAGGGAAAATGTTCCCGGAGAAAAGAAGCCCACCAATGGAATTCCTCTTCCTCCACAGATTTTCAACGAGGAGATGTATTGTGGGGACTACGACACATTCTTTGATGCTAAAGAGGACAACACAGTCTATGAATTTTTGGGTCTGACTCCTCCACCTGGATCTAAgGAGGCACAACAAGCTGAAAATTCACAAAAGCTTCAGAACGGATCTGTCACAGAAGAGCATCCTGATGATGACACAACAAAAATAGAACTCAAAGAGGCTGAGCAAAATGGAGATGCACACACAGCAGAGCTGGAGGAAGACGAAGAGAGCAAGAACGCAGAGACAGACGCTCAAGATGAGAACGAGGAAGAGGAGGAACCTgcggaagaagaggaagagagtAGAAAGCCAGCTGAGGAGGAAGA
>TCONS_00016668
GCCACATGATGCTGATGCACCGGGGACAAAAATAGACAGAGTCGGGGCTGCTGCGCCGTGTGCTTTCCAGTCAAAGCGAGGAGGATCGCTGTGTCTTTAAATACCCTTTTTACAGCTCATTTAATATCGCTTATCCACAAAATGGTCATTAAAGTCTTCCTGGCATCCTCCTCGGGATCGACGGCGATCAAAAAGAAGCAGCAAGATGTTGTCGGCTTTCTTGAGGCTCTTAAAATCGATTACGCACAGCTTGACATTGCTTCAAATGAGGATAACCGAGCGTGGATGAGGGAAAATGTTCCCGGAGAAAAGAAGCCCACCAATGGAATTCCTCTTCCTCCACAGATTTTCAACGAGGAGATGTATTGTGGGGACTACGACACATTCTTTGATGCTAAAGAGGACAACACAGTCTATGAATTTTTGGGTCTGACTCCTCCACCTGGATCTAAgGAGGCACAACAAGCTGAAAATTCACAAAAGCTTCAGAACGGATCTGTCACAGAAGAGCATCCTGATGATGACACAACAAGAAAGCCAGCTGAGGAGGAAGAGCAGGAAGAAGCAGAAGGAGATAAGGTTGAGGACAACCATCTGGTCTCAGAGG
>TCONS_00016669
ATGGTCATTAAAGTCTTCCTGGCATCCTCCTCGGGATCGACGGCGATCAAAAAGAAGCAGCAAGATGTTGTCGGCTTTCTTGAGGCTCTTAAAATCGATTACGCACAGCTTGACATTGCTTCAAATGAGGATAACCGAGCGTGGATGAGGGAAAATGTTCCCGGAGAAAAGAAGCCCACCAATGGAATTCCTCTTCCTCCACAGATTTTCAACGAGGAGATGTATTGTGGGGACTACGACACATTCTTTGATGCTAAAGAGGACAACACAGTCTATGAATTTTTGGGTCTGACTCCTCCACCTGGATCTAAgGAGGCACAACAAGCTGAAAATTCACAAAAGCTTCAGAACGGATCTGTCACAGAAGAGCATCCTGATGATGACACAACAAGAAAGCCAGCTGAGGAGGAAGAGCAGGAAGAAGCAGAAGGAGATAAGGTTGAGGACAACCATCTGGTCTCAGAGGCAGAAGATGAATTGGTGTCTGAGGAGGAAGAAGAACTTCGAGAGCTTGAGGAGGAAGAAGAACACCCATCAGAGgaggat

Function

symbol description
sh3bgr Is expressed in several structures, including intestine; nervous system; otic vesicle; pectoral fin; and somite border. Orthologous to human SH3BGR (SH3 domain binding glutamate rich protein).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040801-27 Is expressed in several structures, including intestine; nervous system; otic vesicle; pectoral fin; and somite border. Orthologous to human SH3BGR (SH3 domain binding glutamate rich protein).

Ensembl:

ensembl_id ENSDARG00000021633

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016667 False 698 mRNA 0.47 6 5923851 5943845
TCONS_00016668 False 607 mRNA 0.47 7 5923851 5946785
TCONS_00016669 True 546 mRNA 0.47 11 5923992 5958803

Neighbor

gene id symbol gene type direction distance location
XLOC_008293 get1 coding upstream 7031 5901970 ~ 5916820 (+)
XLOC_008292 BX088654.1 coding upstream 68626 5855111 ~ 5855225 (+)
XLOC_008291 NA coding upstream 70509 5841557 ~ 5853342 (+)
XLOC_008290 mrap coding upstream 293399 5628363 ~ 5630452 (+)
XLOC_008289 NA coding upstream 452343 5468098 ~ 5471508 (+)
XLOC_008295 igsf5b coding downstream 15106 5973909 ~ 6017920 (+)
XLOC_008296 PCP4 coding downstream 151058 6109861 ~ 6118668 (+)
XLOC_008297 NA coding downstream 200206 6159009 ~ 6160503 (+)
XLOC_008298 bace2 coding downstream 501044 6459847 ~ 6493615 (+)
XLOC_008299 CU655863.1 coding downstream 600247 6559050 ~ 6559185 (+)
XLOC_008463 BX663520.1 misc downstream 15293388 21252191 ~ 21252282 (+)
XLOC_008278 NA non-coding upstream 667069 5256501 ~ 5256782 (+)
XLOC_008271 NA non-coding upstream 1369423 4553896 ~ 4554428 (+)
XLOC_008301 CU633984.1 non-coding downstream 719718 6678521 ~ 6727082 (+)
XLOC_008302 CU694757.1 non-coding downstream 811783 6770586 ~ 6772120 (+)
XLOC_008304 NA non-coding downstream 826846 6785649 ~ 6786055 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_02977237_02979350 SH3BGR coding CI01000092 null 2977237 ~ 2979378 (+)