CI01000024_03957940_03962240 (RGN)


Basic Information

Item Value
gene id CI01000024_03957940_03962240
gene name RGN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 3957504 ~ 3962240 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_03957940_03962240.mRNA
GTCATGTCTTCCATAAAAGTCGAATGTGTTATCAAAGAAAAGAACGAAATTGGTGAGAGCCCAGTCTGGGAGGAGAAGGACTCCTCTTTGTTGTACGTTGATATTATGGGTCGAAGGATCAGTCGGTGGAACTCTCTGACCAGTCAAATAGAGAGTATTGCCACAGAGAAACTTGTAGGTTCTGTGGTTCCACGGCAGGCAGGTGGTTACGTCATCGCGGAGGGAACTCGGTTTGCATTTGTTGACTGGGTAAAGCGTTCAATTACAGCTGTTGCCGATGTCAATGACAAGGAAAAACCAAACACCCGCTTCAATGATGGAAAAGTAGATCCAGCTGGCAGGTTTTTTGCAGGTACCATGTGTTTGGACATGAAGCCTGACGTGATGGATGCGGCGCTGTACACCCTCCATCCTGACCACTCTGTTGTCCAGCATTTTAACCAAGTGCGCATCTCCAATGGTTTGGACTGGTCACTGGATCACCGCATCTTCTATTACATCGACAGTCTGGCATTCATGGTGGAGGCCTTCGATTACAACATCCAGACTGGAGGGCTATCTAACCGCAGAATGGTTTACAAGATGGAGAAAGATGAAGGCATACCAGACGGGATGTGCATAGACACAGAGGGCAAACTGTGGGTTGCCTGCTTCAATGGAGGAAGAGTGCTGCGTATCGACCCACAAACAGGCACACGGCTGCAGACAGTGAAACTACCAGCTGAGAAAACCACCTCATGCTGTTTTGGAGGGAAGGACTACAGTGATCTCTATGTCACCTCAGCGTATACAGGCATGGATTCAGAGTCACTGGCTAAGGAACCTGAGGCCGGCTGCATATTTAAGGTGTCTGGTTTAGGAGCGAAGGGCATCCCACCATATTCATACACTGGATGAAAACAAAGGAAAAAGTGATGTTAATGAAAACATCATGATCATTTCGCTGTCACAATACTACAACAATGTTCTAATTGTGCAATCAGTGATATAACTTTATATAATATTAGACAATCTTAGCTCATTTCAGATGATTTAGGGTCCATTCACACAGAATGTGTTTTGCATTCAACTGCGCTGCTTTTCCATTGTTTTTCTATGCAAACATGCGCAAGACAGACGTGTTTGACCATTGTGCTCGTGTCTTGTGTCTTTGACACAGCATCTCGCGCATGACACAGCGTTCTAAAAACTCGGCGCTCAAGTAAGTTTAATTTTTTTTTAAATGCGCATCCCCACTGACTTGCGTAACGCGTCTTGCGTTAACCCCAAAAACACGTTATGTGAATGGCCCCTTAGATATAAGAAGCAGTTTGTCTAAATTACTAAAATTAAA

Function

symbol description
rgn Predicted to enable calcium ion binding activity; gluconolactonase activity; and zinc ion binding activity. Predicted to be involved in several processes, including L-ascorbic acid biosynthetic process; positive regulation of ATPase activity; and regulation of calcium-mediated signaling. Predicted to be located in cytoplasm and nucleus. Is expressed in intestine; kidney; and liver. Orthologous to human RGN (regucalcin).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01053 gnl, RGN; gluconolactonase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_03957940_03962240.mRNA True 1333 mRNA 0.45 6 3957504 3962240

Neighbor

gene id symbol gene type direction distance location
CI01000024_03950623_03954365 NA coding downstream 3112 3949910 ~ 3954392 (-)
CI01000024_03945597_03947286 NA coding downstream 10218 3945535 ~ 3947286 (-)
CI01000024_03938368_03941795 NA coding downstream 15709 3938315 ~ 3941924 (-)
CI01000024_03919201_03934276 TBX19 coding downstream 22999 3919187 ~ 3934505 (-)
CI01000024_03792493_03872952 KALRNB, KALRN coding downstream 84552 3792463 ~ 3872952 (-)
CI01000024_03964560_03976364 VPS16 coding upstream 2014 3964254 ~ 3976364 (-)
CI01000024_04128028_04128273 NA coding upstream 164829 4127069 ~ 4128528 (-)
CI01000024_04244945_04245709 NA coding upstream 282048 4244288 ~ 4245767 (-)
CI01000024_04262881_04279056 USP40 coding upstream 300313 4262553 ~ 4279217 (-)
CI01000024_04280957_04294789 TSPEARA coding upstream 318194 4280434 ~ 4294789 (-)
G123723 NA non-coding downstream 22565 3934726 ~ 3934939 (-)
G123698 NA non-coding downstream 65135 3892163 ~ 3892369 (-)
G123697 NA non-coding downstream 65862 3891412 ~ 3891642 (-)
G123668 NA non-coding downstream 193407 3763444 ~ 3764097 (-)
G123577 NA non-coding downstream 203289 3753019 ~ 3754215 (-)
G123728 NA non-coding upstream 13708 3975948 ~ 3976198 (-)
G123730 NA non-coding upstream 25154 3987394 ~ 3987608 (-)
G123806 NA non-coding upstream 57175 4019415 ~ 4019795 (-)
G123812 NA non-coding upstream 61546 4023786 ~ 4024060 (-)
G123822 NA non-coding upstream 80651 4042891 ~ 4043149 (-)
G123233 NA other downstream 1402468 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 3130653 824968 ~ 838550 (-)
G125457 NA other upstream 3394997 7357237 ~ 7358104 (-)
G125798 NA other upstream 4013427 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031848 rgn coding NC_007117.7 CM002890.2 9130989 ~ 9139986 (+)