CI01000024_03964560_03976364 (VPS16)


Basic Information

Item Value
gene id CI01000024_03964560_03976364
gene name VPS16
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 3964254 ~ 3976364 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_03964560_03976364.mRNA
ATGAAGACAACAGCTATGCCCAGAGGGTACGTTTTAAAAGCCAGCACACCTGCGCCATTCTTCTGTCCATTTCTGGATCAAACGACACAACAGGTGTCCATATCAGGAGCGGAGGTCATGGCGTTTGTCACAGCTAACTGGAACCCTTTGGGCGAGGCTTTTTACAGAAAGATTGAATTGTATGAGATGGGCTGGAATCTGAAAGATGGTCTGAGAGACTGTCTGGTCGCTGCAGCGCCATATGGGGGTCCCATCGCTCTCCTAAAGGGGCACAGCCGCCGCTCTCCCAGTGCCAGACCTCAGTTAGAAATCTACTCTTCCTCAGGACTGTCTCTGGCCAGTTTTCAATGGAAGAGTGGAGTGGTGAAGCAGTTGGGTTGGACGGTGTCTGATGACCTACTGTGTGTTCAGGAGGATGGCACTGTGCTTGTCTATGATCTCTTTGGTGGCTTCAAGAGACACTTCAGCATGGGCAATGAAGTTTCTCAGAGTCAGGTGCTGGAGACCAAGATTTTCCATTCGCCATACGGGACAGGAGTTGCCATATTGACAGGTGCCTTGCGATTCACTTTGGCCACGAACATTGATGACATAAAACTGAGGCGGTTACCTGAAATTCCAGGTCTACAGGGGGTTCCTTCATGCTGGGCAGTCCTGACTCAGGACAGGCAATGTAAAGTGCTGGTGGCCAATGAATCTCATCTGTTCATCTTAGACAATACAGCCTGCACACCTGTGACTCCTCCAGGTCTCTCTCCAGACGCATCCAGTATAGTTCACATATGTGTCTCATTCAGTTATAAGTATCTGGCACTGCTCACTGACTCTGGTCATGTGTGGATGGGTACGTCTAATCTAAAGGAGAAACTCAGCGAGGTGGACACCAAAATCAAAACTCCCCCCAAACAGATGGCCTGGTGTCGCAGGCCCAAGAGTCAGCAGCCGTCGGCTGTGGTCATGTGGGATGGGCTTCTCCTAGTGGTGGGAGAGTGTAAAGAAACAATTAAGTACCACCTGGACGACGAATCGATTCTCGTGCCAGAACTGGACGGTGTCCGGATCATCAGTGGAACGCACCATGAGCTTCTGCAAGAGGTTCCAGGTGCGTGTGAGGAGATCTTTAAAATTGCCTCAATGGCTCCTGGAGCATTACTGCTGGAGGCACATAAAGAATATGAGAAAGAGAGTCAGAAGGCAGATGAGTATCTGAGAGAGATTAAAGAACAGAGTCTGCTGAGCGAGGCAGTGAGGCAGTGTGTGGAGGCCGCTGGACATGAGCATGAACCCGAGACTCAGAAAACTCTCCTGAGGGCGGCCTCATTTGGGAAGTGCTTTTTGAGTAATTTTCCTCCAGAGCAGTTTGTCAGCATGTGTAGAGACCTGCGGGTGTTGAATGCAGTACGAGACTATACCGTCGGCATTCCTCTTACCCACACTCAATTCAAACAGATGACCGTACAGGTGCTTATCGACAGACTGGTGTATCGTAAACTTTATCCACTGGCTATTGAGGTTTGCCGCTATCTAAAGACTCCAGAATATCAGGGAGTGAGCCGAGTACTCAAACACTGGGCCTGCTACAAGGTCCAGCAGAAGGAGGAATCAGATGAAGTCATAGCAAAATCTGTGAGTGTGAAGCTAGCTGATGCCGCAGGAATCTCCTACTCTGAAATCGCCACTAAAGCATATGAGAGTGGACGCACAGAGCTCGCCATTAAGTTGTTGGAGTTTGAGCCTCGCTCTGGTGAGCAGGTCCCACTGTTGTTAAAAATGAAGAAGAGTCCTCTGGCTTTGAGCAAAGCCATCGAGAGTGGAGACACAGACCTCGTGTACACAGTGGTCATGTACCTGAAGAATGAGCTGAACAGAGGAGACTTCTTCATGATGTTGAGGAACCAACCTGTGGCTCTGAGCCTCTACAGACAGTTCTGTAAACATCAAGAACAGGAAACACTGAAAGATCTTTTCAATCAAGATGATGATCATGAAGAACTTGGCAATTTCTATGTAAAGGCCAGTTATAAAGAGCAGAGACTGGAAGCTCGGATTGGTCTTTTACAAAGTGCCGTGGACGAGTACTACAAAGCCAAGAATGAATTTTCTGCCAAGGCCACAGAAGATGAGATGCGTCTGCTGCGGTTTCAGAGGAAGCTAGAGGAAGAGAAGGGTGAGCCGCTTGTGGGATTCTCTCTTCATGACACCATGACCATGCTGCTGTCAGTGGGACTGCACAAACACGCCGAACAACTTTACAAAGACTTCAAAGTGCCCGACAAGAGGTTCTGGTGGCTGAAGTTGAAGGCTCTGGCTGAGAAGGAGGACTGGGAAGAGCTGGAAAAATTTGCCAAAAGCAAAAAGTCTCCTATTGGATATCTGCCATTTGTTGAAATGTGCATTAAACACCATAACAAATATGAAGCCAAGAAATATGTCTCTAAAGTCACACCTGAGCAGAAGGTCAAAGCTCACCTCGCAGTGGGGGATGTGGAAGGCGCCGCAGAGGCTGCCATCGAGAGGCGTAATGAATCCGAGATCAGTACTGTTCTGTCACGCTGTTCAGCCACCACTGATCATATTCTGGTGGAGCGCCTCAACCGTGCTAAAGCCACTGCTGCCAAAAATGAACCCCTGTGCACCATTTCTCCAGCACAAAACAGCACGCAGCAGAATTTGCTTTCGGCTGACTAAACAACTCCTGATGTAATCGAACATTTTCATGAAAATTCTGCACAATGAAGGAAAATATCTTGGGAGAAGAAGACAGACAGCAAGAAAACTTGCACGTTAGCAATTTCTGTTTTTCCTGCATCTGTCGGACAGCTAGAAGCGGTTCCCCTCTTGCACTTCACTGTAAACCTTAACCTTTGTACCTGTAATTGCATTATGAATCATTGTGTTTGTTGCAGAATCATACTGTCATTGATCATATGCCTGTGTTCTGTAGAGATTATCTGCCTTTATTAATATAACAAAACATTTGTTATTTTAATTAAA

Function

symbol description
vps16 Predicted to enable actin binding activity. Predicted to be involved in endosomal transport and vacuole fusion, non-autophagic. Predicted to act upstream of or within intracellular protein transport and vacuole organization. Predicted to be located in early endosome; late endosome membrane; and lysosomal membrane. Predicted to be part of HOPS complex. Predicted to be active in endosome. Human ortholog(s) of this gene implicated in dystonia. Orthologous to human VPS16 (VPS16 core subunit of CORVET and HOPS complexes).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20180 VPS16; vacuolar protein sorting-associated protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_03964560_03976364.mRNA True 2994 mRNA 0.48 24 3964254 3976364

Neighbor

gene id symbol gene type direction distance location
CI01000024_03957940_03962240 RGN coding downstream 2014 3957504 ~ 3962240 (-)
CI01000024_03950623_03954365 NA coding downstream 9862 3949910 ~ 3954392 (-)
CI01000024_03945597_03947286 NA coding downstream 16968 3945535 ~ 3947286 (-)
CI01000024_03938368_03941795 NA coding downstream 22459 3938315 ~ 3941924 (-)
CI01000024_03919201_03934276 TBX19 coding downstream 29749 3919187 ~ 3934505 (-)
CI01000024_04128028_04128273 NA coding upstream 150705 4127069 ~ 4128528 (-)
CI01000024_04244945_04245709 NA coding upstream 267924 4244288 ~ 4245767 (-)
CI01000024_04262881_04279056 USP40 coding upstream 286189 4262553 ~ 4279217 (-)
CI01000024_04280957_04294789 TSPEARA coding upstream 304070 4280434 ~ 4294789 (-)
CI01000024_04306066_04310552 UBE2G2 coding upstream 329280 4305644 ~ 4310552 (-)
G123723 NA non-coding downstream 29315 3934726 ~ 3934939 (-)
G123698 NA non-coding downstream 71885 3892163 ~ 3892369 (-)
G123697 NA non-coding downstream 72612 3891412 ~ 3891642 (-)
G123668 NA non-coding downstream 200157 3763444 ~ 3764097 (-)
G123577 NA non-coding downstream 210039 3753019 ~ 3754215 (-)
G123730 NA non-coding upstream 11030 3987394 ~ 3987608 (-)
G123806 NA non-coding upstream 43051 4019415 ~ 4019795 (-)
G123812 NA non-coding upstream 47422 4023786 ~ 4024060 (-)
G123822 NA non-coding upstream 66527 4042891 ~ 4043149 (-)
G123833 NA non-coding upstream 80213 4056577 ~ 4056782 (-)
G123233 NA other downstream 1409218 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 3137403 824968 ~ 838550 (-)
G125457 NA other upstream 3380873 7357237 ~ 7358104 (-)
G125798 NA other upstream 3999303 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location