XLOC_008301 (CU633984.1)


Basic Information

Item Value
gene id XLOC_008301
gene name CU633984.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6678521 ~ 6727082 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016680
AATGGTGAACAAAAGGGTTAGGTGCAGCTTGTCCGCGAGTGTGCGTGTTTAGATTGGAAAAGCGTGCAGCTGGAGAGTTGCCTGAGGAACTGGAAAAGATAGTCCAGGGAGTTGAAGCACTTGAGGATGCCAGGGCATCCAGGGACAAGCTAAGCTCAAAGATTTTGCTTAATGTAACTGCCGTCCAAGTACTGAAGACCCGACGAAGGAAAGCAAACCAAGAAAAAGAGACTGAGAAGGCAGATAAGGAGAAAACATGGGTGCACGTGTGTACTCGTGCCATCGGCGGAACTATTTTTAGGAACAAAGTATTGCAGTTCCTGTTGACTACCTCAAAGAGAAGCCACGGAGACTGTAAGATATCTTTGGAGGTTTACTTAAAGGATCGCTCGGTGTCTATTATAGTGTCTATTGATCCCTGGATGTCTTCAGCACCCAGCCATGGGAGAGTGGACCATTTTAGAGCGCCTCCTGGAGGCCGCTGTGCAGCAGCACTCTACTATGATCGGAAGGATTTTGCTGACAGTTGTGGTGATATTCCGTATCCTAATCGTGGCCATTGTTGGTGAAACCGTCTATGAGGATGAGCAGACCATGTTTATCTGCAACACCCTCCAACCGGGCTGCAACCAGGCCTGCTACGACAAAGCCTTCCCCATTTCCCACATCCGATACTGGGTCTTCCAGATTATCCTTGTCTGTACACCAAGCCTGTGCTTCATCACCTATTCAGTACACCAGTCAGCCAAACAGCGTGACCGCCGCTACTCCTTCCTCTACCCAATAATGGAAAAGGACTACAGTCGTGAGGGTACGCGTAAACTACGCAACATTAACGGCATTTTGGTGCAGCACTCTGAAAGTGGCGGTGGAAAGGATGAACCTGATTGCTTAGAGGTAAAGGAGATCCCAAATGCTCCAAGAGGCCTCTTGCATGGCAAGAGTTCAAAGGTACGCCGACAAGAGGGGATTTCTCGCTTCTACATAATCCAGGTAGTGTTCCGCAATGCACTGGAGATAGGTTTCTTAGCAGGGCAGTACTTTCTATATGGCTTCAGCGTTCCTGGCATCTTCGAGTGTGACCGATACCCCTGCCTGAAGGAAGTGGAGTGCTACGTATCCCGACCCACTGAGAAGACGGTCTTCCTAGTGTTCATGTTTGCAGTGAGTGGCATCTGCGTTGTGCTGAACCTCGCTGAACTCAACCACCTCGGCTGGAGAAAAATCAAAGCTGCCATTCGAGGTGTCCAAGCCCGCAGGAAGTCCATCTGTGAGATCCGCAAAAAGGACATGGCCCACCTGTCACAACCGCCAAACCTGGGCAGGACCCAGTCCAGCGAGTCTGCTTATGTTTGATCTCCATTCATCCAAATATGGCGTCGCAAGGAGTTGAAGAGTGGAACGCTGAAATGTCAAGTTGGTTAAGgtacttgtgtaaatgtttaaaatgaagaGAGAGGGGGGGTGGGCTCAATATAGCCATACTCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000035765

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016680 True 1488 unprocessed_pseudogene 0.49 2 6678521 6727082

Neighbor

gene id symbol gene type direction distance location
XLOC_008300 nop53 coding upstream 12218 6652396 ~ 6666303 (+)
XLOC_008299 CU655863.1 coding upstream 119336 6559050 ~ 6559185 (+)
XLOC_008298 bace2 coding upstream 184906 6459847 ~ 6493615 (+)
XLOC_008297 NA coding upstream 518018 6159009 ~ 6160503 (+)
XLOC_008296 PCP4 coding upstream 559853 6109861 ~ 6118668 (+)
XLOC_008302 CU694757.1 coding downstream 43504 6770586 ~ 6772120 (+)
XLOC_008303 si:ch1073-228b5.2 coding downstream 46794 6773876 ~ 6784965 (+)
XLOC_008304 NA coding downstream 58567 6785649 ~ 6786055 (+)
XLOC_008305 sirt2 coding downstream 59675 6786757 ~ 6807963 (+)
XLOC_008306 NA coding downstream 140194 6867276 ~ 6875548 (+)
XLOC_008463 BX663520.1 misc downstream 14525109 21252191 ~ 21252282 (+)
XLOC_008292 BX088654.1 non-coding upstream 823296 5855111 ~ 5855225 (+)
XLOC_008291 NA non-coding upstream 825179 5841557 ~ 5853342 (+)
XLOC_008289 NA non-coding upstream 1207013 5468098 ~ 5471508 (+)
XLOC_008311 NA non-coding downstream 1007407 7734489 ~ 7737531 (+)
XLOC_008312 CR589941.1 non-coding downstream 1078697 7805779 ~ 7805920 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_03478431_03479274 GJD1A coding CI01000092 null 3478431 ~ 3479793 (+)