CI01000024_06909681_06921880 (CCDC88AA)


Basic Information

Item Value
gene id CI01000024_06909681_06921880
gene name CCDC88AA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 6909322 ~ 6921880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_06909681_06921880.mRNA
AACATGCAGCTGTTAACAGATGCACGAGCAGCCAGGATGTACCGTGACGAGCTAGATGCGATGAAAGAGAGAGCCATCAGAGCAGATAAACTGGAAAGTGAAGTGGCTCGCTACAAAGATAAACTTCACAACATGAACTTTTACAAAACCAAACTGGAGGAGCTAAAGGAAGATAATCAGGTGTTGTTGGAAAGTAAGGCCATGCTGGAGGAACAGCTACAGAGCATTAAATTACGATCTGACAAACTGCACCACCTGGAGAAACACAACCTCCTACTAGAGGCAAAACTTCATGACATGGAAGAGGAAAGAACTGTGGACAGGAGACAAATAGAGGAGCTGCTGGAAAGGAACATTATATTGGAGTTCTCTCAGAAAAGTAGTTTGGAGGAATCACAACGCTTGGGCTGGGAGCTAGAACTCGCCAAGAATCCTCAACAGAATACAGGAACAGAGCTGAAGTCTTTGGGCCAGGAGGTAACTGAAAAGACATGTAGCAGGTTGCTGAAACTGGAGAAGGAGAACCAGAGGTTGTTGAAGTCCCTGGAAGAACTTCAAGGAACCAGTCACCCATTGGATGAGTTTATTTCTAAATCTAAACATATTGAGGAAAATGGGAGGACCAACAATCAGTCCCTTGACACAGAACATCTGCATGCATCCTTGGAAAATACTAACGGCAATCTTCATTGTCTTGAAGTAGAGCTCCATGAATTGGAGATGAAGAACCAGAGTCTTCAAGTCAATTTAAACCAAAACCAAGGTCAAGTAGATATAGAAAACAAAGGTCTAGTGCATGAAAATGGACATCTGGGACAAGATAGGAGTTGTCTGGAGAAGGCGAATCGGAGATTGCAGCAGCAAGTGAAGATCCAGGAGGCCTCGTTGAATAGTAGCAGTTTGAAGTTGGCCGTTCTAGAGAAGGAGAACCGTACCCTGGTTAAAAAGATTACCTATCTAAGTGAGGCCTGTGCCAAGAACAAAGAACTGGAGAAGGAAAACCAGGAGCTGATTCAACAGGCTGGAGTAGACAAGAGGATGCTGATGACATTAAGAGAGGAACTGCTGGACCAGAGGCTGAAATTGCAACAGAAAGAATCTGATCTTGAGAAATTGAATTATGAGCTGGAGAGGATGAAGTTAAACCAGGAGAAACGAATGGGAGATCACGAGGCTGTAGACCAGGGGTATCCAGACATTCACTTATGTATTCAGTCAAACCCAAGTAAGTGTAAGCAGTTGGAGTCAGAGCTGGAGTCTTCTCTAATGAAATCCCTGAAGATTAAAAAAGAGAGAATGGCTGCCCTGGAGGCCCGTCTGCAAGAATCGGCCAAGATAAACCAGCAACTACGACAGGATCTCAAAACTGTCAAACAGAACTATGAGGCATTGCTTCAGAGGGAGGAGGAGGAAAAGGCAGGACAATGCTCTCCACCAGAGAGGGCATGGCACAGAGACAGTCAGGAGGCCACGTGGGCATTGCTCAAGGTCAAAGATCGACTCATTGAGGTGGAGAGAAATAATGCAACATTACAGGCTGAGAAACAGGCATTGCAAACACAACTGCAGACCTTGCAGGTGCAGTCAGATGGGTTGCAGGCACAAATAATTGCATTGCAACAGCAGACGGCTTCCCTGCAGGAGAACAACACAGCACTGCAGACACACAATGCACAACTGCAGGTAGAGAAGTCCACTTTATCTTCCCAGAATTCCTCTCTCATGGCCCATAATGAACGGCTACAGCGGGAACGGCAGAGTTCTGAGGCTGAGAGGGAGGGTGCAGTACGGGAGAGAGAAGATCTGCGCACCGTTAATGAACTTCTTCTCCGGGACCACGAGAGATTGAGCGTCCTGCATGAGAGACAGGCAGCAGAGTTGGAGGTGCTCTCCCACAGGTACTCAACAATGGAGAACAGTCACCGAACACTGGAGATAGAGCACAGATCACTGGAGGACAGGTATAACACGCTACTTCAACAGCGTGCTCAGCTGGAGGGGTTAGAGAGAGCTCTCAGAGAAGAACAGCAGAAGATGCAGAATGAAATATGCACAAACAGGAACACAACAACAGAGTGCCAAAGACTCAGAGACGAGAAAGACTGGCTGAATCAGATCTACCAGAAGCTGTTGGCAGAGAATGAGGGACTTCAGGTTGAGCACAAGAGCATAAAAAGCCAGTTGAACTCAAGCAAACTGGAGCAGACACAGCTGGAGTCAGAGCTGTCCAAACTCAAAGAGCAGAACCAGCAGCTGGAGATCGCCACTATTAAACTGACCAACCAGTGTGAGTTGCTGACCCAGCTGAAGGGGAACTTGGAGGAAGAGAACCGCCACTTGCTGGACCAGATCCAGAGCCTGATGCTGCAGAACCGGACCCTGCTAGATCAGACTATGGAGAGCAAGGACCTGTTCCATGTTGAACAGAGACAATATATAGACAAACTGAATGAACTCAGAAGGCAGAAGGAAAAGCTGGAAGAGAAAATCATGGATCAGTACAAGTTCTATGACCCATCGCCTCCACGCAGACGAGGCAACTGGATAACCCTGAAGATGAGGAAGTTGATGAAGACGAGGGCTCGTGATCAGGAGCACGTCCATTCTCCAACTCTCCGCTCCGAGTCATGCGAGGGTCTGGATGACCTGCGCTGCCATGACAACGGCTCCTTCGTGGGTTCTCAGGGCTCAGAGGAATCTGCTCCCAACTCCCTTAATGGCGACACCCTGTCCCCTAAGAGGAGCAGCAGTGAGTATCACCTCAGTTACATGAAATTGTCAGAGTCCAATCATTCCAGCCAGGAACATCCAGAAACAAGCCATTTAATAAACCGCAAACCCTTCATCCCAACATCCCCAGGTCAGGAGAGTGAGAACAGAATAGCATGGAGCAGCCAAGTAAAGGGTAGTAACTCACCCCAGAATCCGCTGATTAGAAAACTCGTCAACTTCTGCTCCCCAAGCCCTTGGCGCCACAGAGCACTTCAAGAGGAGTTCAGCTACTCTAATTAAATATTTATGCAGTTATTTGATGTATGTTTCCTGATTTATTTCAAGTCTGTGGGTCACGTCTTTGGTCCTCCATTCTTTTCCACACTGTTCAACACAAATATTTCTGTAACACTTTACAATAATGTCTCATTTATTAACATTAGCTAATGCACTAATATGAACTAACAGTGATGAGTTACAGCATTTATTAACCTTTATTATGTTAGTTAATAAAAATTTTGTTTACAGCGCACTAATGTTAACTCGTACAATTTTAGATCTTGTAATGTAGTTAAGTACTGTTAATAAATAAAACCTTATTGTAAAGTGTTACCAATATTTCTTGTGTTTTTAAGGGGGTCATATCATGAGGAATTAAA

Function

symbol description
ccdc88aa Predicted to enable dynein light intermediate chain binding activity and microtubule binding activity. Predicted to be involved in cytoplasmic microtubule organization and cytoskeleton-dependent intracellular transport. Predicted to act upstream of or within Wnt signaling pathway; cell migration; and regulation of actin cytoskeleton organization. Predicted to be active in centrosome and cytoplasm. Orthologous to human CCDC88A (coiled-coil domain containing 88A).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_06909681_06921880.mRNA True 3371 mRNA 0.46 14 6909322 6921880

Neighbor

gene id symbol gene type direction distance location
CI01000024_06889558_06901776 MTIF2 coding downstream 6821 6889447 ~ 6902501 (-)
CI01000024_06867041_06878399 NA coding downstream 30509 6867041 ~ 6878813 (-)
CI01000024_06451305_06495178 NA coding downstream 410892 6451112 ~ 6498430 (-)
CI01000024_05986174_06002425 NA coding downstream 906513 5985732 ~ 6002809 (-)
CI01000024_05879244_05880952 NA coding downstream 1028008 5878709 ~ 5881314 (-)
CI01000024_06944906_06955771 NA coding upstream 22082 6943962 ~ 6955771 (-)
CI01000024_06987928_07001260 CEP170L coding upstream 65576 6987456 ~ 7001358 (-)
CI01000024_07117698_07119483 NA coding upstream 195236 7117116 ~ 7120003 (-)
CI01000024_07131727_07169937 SEMA5BB coding upstream 209133 7131013 ~ 7169937 (-)
CI01000024_07239312_07251354 DC1I2, DYNC1I2, DYNC1I2B coding upstream 315662 7237542 ~ 7251865 (-)
G125315 NA non-coding downstream 21165 6885162 ~ 6888157 (-)
G125348 NA non-coding downstream 27327 6881747 ~ 6881995 (-)
G125344 NA non-coding downstream 56427 6852600 ~ 6852895 (-)
G125312 NA non-coding downstream 132654 6776452 ~ 6776668 (-)
G125309 NA non-coding downstream 144431 6764188 ~ 6764891 (-)
G125355 NA non-coding upstream 43470 6965350 ~ 6965589 (-)
G125356 NA non-coding upstream 43905 6965785 ~ 6965996 (-)
G125318 NA non-coding upstream 61749 6983629 ~ 6985603 (-)
G125374 NA non-coding upstream 107810 7029690 ~ 7031113 (-)
G125379 NA non-coding upstream 120519 7042399 ~ 7042692 (-)
CI01000024_03938368_03941795 NA other downstream 2967398 3938315 ~ 3941924 (-)
G123233 NA other downstream 4354286 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 6082471 824968 ~ 838550 (-)
G125457 NA other upstream 435357 7357237 ~ 7358104 (-)
G125798 NA other upstream 1053787 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location