CI01000024_07433804_07468501 (COL28A2B, COL28A1, COL28A1A)


Basic Information

Item Value
gene id CI01000024_07433804_07468501
gene name COL28A2B, COL28A1, COL28A1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 7433470 ~ 7468501 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_07433804_07468501.mRNA
GTTGGACTCAAGCTGGTACTGTACTGAAATCAGAGCTACTTTACAATGAGGACTGTAATTTGGAACTGGCATTTTTGGTGGACAGTTCAGAAAGTGCCAAAGGCAACCATGCCCAAGAGAAGCGTTTCGTTACTGATCTCGTTACCCGGATCCAGAATATCCATCTCCAAACCGGGCAGGGCTTGAACTTCAGAACTGCTCTCCTTCAGTATAGCAGTCATGTGATCACCGAGCAGTCCTTTAAAGATTGGAGAGGTGTGCCCACCTTCCAGGACCGCATTGCGCCCATTCCGTACATAGGGCACGGTACCTACACCACCTATGCCATCACCAACCTCACCCGCATCTACCTCGAGGAGTCTGGCCCTGGCACCGTGAAGGTGGCCATTCTGCTGTACGACGGCGTGTCGCATCCCAAGAATCCCGATATTTTCTCTGCTTTAGCTGATGCCAAGAACCAAGGGATTAAATTCTTCACAGTAGGTTTCACATCTGCTGCCAACGTGGAACAGCTGCGACTACTGGCCAGTCCTCCAGCCACCCGCTATGTACACAACCTACAGGACAAGGGTGTCGTGGACAAGATTGTCAAAGAGATTAACCATTGTGAGCCTAAACTGATTGCAGAGGGCATTGGTGCCAATGTTTTCTACAATCTACTTACATGTGACCGTGTCTCACAGCGCAAAGCATCTGCACATGGTCAGGAAACTTTTACGACTGAATATGTTAGCCAGCGCTGCTGTCTCCTGCTAGAGACTGAGGTGGCCAATGAAGTGTGTCCTCTTTCCCCAAAATGCACTTGTGAGAAAGGAGAGCGAGGACCCAGTGGACCCGCTGGTAAAAAGGGTCGTCCTGGGGATGATGGAAGTCCAGGACCTAAAGGACAAAAGGGAGAGGGCGGTTTCAGTGGATCTCCTGGTCGAGATGGGACAGAGGGGAAACCTGGATACAAAGGAGAAAAGGGTTTGCCCGGACCTAATGGAGACATTGGGCCAGAGGGCCTACCAGGCAAAAAAGGGGAGAGAGGCTTTCCTGGACCACCAGGAATACAGGGTGAGACTGGCAGTGGGCTTCCTGGACCAAAGGGTGATGTGGGGTTCCAAGGCAGAATGGGTCCTCCTGGGCCTCCTGGGATCGGCGAGCCTGGTCTACCGGGGCCGCAGGGGCTGCAGGGTTTGCCAGGAGAGAAGGGCCCTCCAGGAGAGGGTTTACCAGGGCCAAAGGGTGAGAGGGGTCTGGAGGGGCCAAAAGGACCCAGAGGACCAGGTGATTTTGGTCCACCTGGGCTTCAAGGTCCAGTTGGGCTTCCTGGAATAGGGATCCAAGGAGAGAAGGGTGATCAAGGTTTACCAGGTGAGATTGGTGCACCAGGAGAGAGAGGAGCAGGAGAACCGGGAGCTAAAGGGGAACCTGGAGCTCCAGGGTTATCAGGATTACCAGGTTTACCTGGGGAAGATGGAGCTCCAGGACAGAAGGGAGAACCAGGAGCCTCTGGGTTGAGGGGCCCTGAAGGAGCAGCAGGAATGGGCATCCAGGGTGAAAAAGGTGATCAGGGTCAGCGGGGAATCCGTGGGTTAGCAGGGCCACCGGGAATAGCTGGACCCTCAGGGTCAAAGGGAGAGCCTGGCACCCCTGGGCGACTGGGATTACCTGGACTACCGGGACGTGCCATACCAGGACCAAAAGGTGATCGTGGTGACCCTGGTCCTCCAGGTCTAAGCGGCCCTAAAGGGGACGGCTATCCTGGTCCCTCAGGGCCTCCTGGTCTTCCTGGTCTTCCAGGAGAACCTGGTCAAGAGGGCATTGGAATACCAGGACCAAAGGGTGATGTTGGCTTCAGGGGTTTACCAGGTCAACCTGGACCTCCAGGGGAAGGACTCCAAGGACCACCTGGCAACATGGGAAGACCAGGACCTCCTGGGCCTACTGGGCCACCAGGACAAGGCATACAGGGTCCAAAGGGGGATCGTGGAGCTCAGGGTGAGAGAGGGATGAAGGGAGTTAAAGGTGACATGGGAGATCCTGGCATTCCTGGACAAACAGGTAGACCGGGAATCAGAGGAGACTCTGGGTTAACGAGGGACGAGATAATCAGAATGATCAGGGAGATTTGTGGCTGTGGAGTCAAATGTAAAGAGCGTCCTATGGAGCTAGTGTTTGTGATTGACAGCTCTGAGAGCGTTGGGCCTGAAAACTTTGAGATCATAAAGGACTTTGTGGCCGCACTAGTTGACAGACTCACTGTGGGGCGTAATGCCACTCGAGTTGGCCTCGTTTTGTACAGCCTTGAGGTCCAGCTTGAGTTCAACCTCGCTCGCTACATCACCAAACAAGATGTTAAACAAGCCATACGTAGGGTTCACTACATCGGCGAGGGCACGTACACCGGCTCTGCCATCCGCAAAGCAACTCAGGAAGCGTTTTACAGTGCGAGGACAGGGGTGAGGAAGGTTGCCATTGTCATCACAGATGGACAAACGGATAAACGGGAGCCTGTGAAGCTGGAGATCGCTGTTAGGGAGGCGCATGCAGCCAACATTGAGATGTACGCTCTGGGGATTGTTAACATTAGTGATCCAACACAGCAAGAGTTTCTCCAGGAGCTTAATCTTATTGCGTCGGACCCTGACACTGAGCACATGTACTACATAGACGACTTCAACACCTTGCCAGCTCTGGAGTCCAAACTAGTCAATCAGCTCTGTGAGGATGAAAATGGAGCACTTATCTTCAGTCGCATCAATGGTTTTGAAAACGGATATGGAATTAATGGCAACCGCATCAATGGTAACGGCAGATATAATTATGGCACCAACATAAATGAAGGCAACAGAGAGAACAAGGGAACACGCTCTGGGATGAACACTGCCGCTCAAGGGCACGGGAGGGGAAAAACCTTTGCTCCAACAGTTGGTCCAGACATTAATGAGGAGGTTGAGCGTGTAACTGAGACACCAGACACAAACACTTCAGAGCAGAGCAGTGAGGTTGTGCCTCTGGACCCCCGTTGTGAGCTGCTCCTGGATCAGGGCCCTTGTCGGGACTATAACATCCGATGGTACTATGACCGGCAGGCCAACGCCTGCGCACAGTTCTGGTACGGAGGTTGTGATGGGAACCGGAACCGCTTTGACACAGAAGAAGAGTGCAAGAGGACATGTGTGGTCGTGAGAGCAGGTAAAATACAAACCTGATAAATGTTACAGCAAATGAAAATAGGCACCAGTTCCTGCCATATAGTCACACTCTTTTCTTTGCGTTTAGGAGGCTGATACACATTGTGGATAAATTTTCCTTTATCTGCAATTCCTCACTTATCACTGCAATGGACCTGCACTGAAATACACAAAGCATATCAAAAATTTTGTAGGAAAGGACATTTATTGAGGGACATTGTAATGCAATAGATAACAGAGAAAGCACAGTACTTTCATATCACAACCAGCAGAACTGTGAATAAGAAGTATTGTAATATTGTACACTGTCATATTTACACAACATTCATTGAATTGCCATTTATGTAATAAA

Function

symbol description
col28a1a Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in intestine; liver; and muscle. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).
col28a2b Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Is expressed in integument; intestine; liver; and thymus.
col28a1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Located in collagen-containing extracellular matrix.

NR:

description
collagen type XXVIII alpha 2 b precursor, partial

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_07433804_07468501.mRNA True 3531 mRNA 0.51 31 7433470 7468501

Neighbor

gene id symbol gene type direction distance location
CI01000024_07424110_07430994 KLHL41B coding downstream 2476 7423927 ~ 7430994 (-)
CI01000024_07415578_07421136 PPIG coding downstream 12334 7415545 ~ 7421136 (-)
CI01000024_07413462_07414187 PHOSPHO2 coding downstream 19283 7413086 ~ 7414187 (-)
CI01000024_07402113_07409179 SSB coding downstream 23675 7401160 ~ 7409795 (-)
CI01000024_07340241_07341456 NA coding downstream 91954 7339774 ~ 7341516 (-)
CI01000024_07533115_07535965 NA coding upstream 63863 7532364 ~ 7536390 (-)
CI01000024_07549529_07561249 RAD54L coding upstream 81014 7549515 ~ 7561249 (-)
CI01000024_07566408_07567250 NA coding upstream 97777 7566278 ~ 7567250 (-)
CI01000024_07604312_07619531 ST3GAL3, ST3GAL3A, ST3GAL3B coding upstream 135811 7604312 ~ 7619531 (-)
CI01000024_07672858_07695341 KDM4AB, KDM4A coding upstream 204092 7672593 ~ 7695825 (-)
G125459 NA non-coding downstream 56207 7377034 ~ 7377263 (-)
G125386 NA non-coding downstream 146534 7284938 ~ 7286936 (-)
G125389 NA non-coding downstream 303466 7128822 ~ 7130004 (-)
G125385 NA non-coding downstream 318584 7113143 ~ 7114886 (-)
G125425 NA non-coding downstream 331550 7101685 ~ 7101920 (-)
G125523 NA non-coding upstream 44377 7512878 ~ 7513128 (-)
G125716 NA non-coding upstream 45149 7513650 ~ 7513971 (-)
G125725 NA non-coding upstream 45803 7514304 ~ 7545425 (-)
G125732 NA non-coding upstream 69156 7537657 ~ 7539613 (-)
G125721 NA non-coding upstream 133848 7602349 ~ 7603171 (-)
G125457 NA other downstream 75366 7357237 ~ 7358104 (-)
CI01000024_03938368_03941795 NA other downstream 3491546 3938315 ~ 3941924 (-)
G123233 NA other downstream 4878434 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 6606619 824968 ~ 838550 (-)
G125798 NA other upstream 507166 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031781 col28a2b coding NC_007117.7 CM002890.2 3640381 ~ 3675797 (+)