XLOC_008306


Basic Information

Item Value
gene id XLOC_008306
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6867276 ~ 6875548 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018888
GGAGTCATTCTCTGGTGGTCGTTCACCCCATATCCTCAGaTGCTTGAAATCTGGCCTTTACGACAGGTTGCTATCAAAAATAACCCCCACATTTTTGACTGAAGATGAGGACTGAACTAAGAATCCATCAAGGATGGAGATTAACTTCGAGCTCGAGCACCATCCGTTTCCCTGACTGTTTGTTATTAAAGAGATGGATGGTGGCTTGCAGTGCCAGCCCGACACAACCGCAATTACAGCAGGGCCCATGATAGatagagggagagagggaggagATGGAGAGAAGAAGATAGAGAGAGAAGCATCTATCACACCCCTTAATCTACCTGTCACTCCAGGGGGAGAGGCAGGAGAACAGAGTGTGTGGAACAAGTGAAAGAGAGAAATAAAGAGGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018888 True 396 lncRNA 0.47 3 6867276 6875548

Neighbor

gene id symbol gene type direction distance location
XLOC_008305 sirt2 coding upstream 59313 6786757 ~ 6807963 (+)
XLOC_008304 NA coding upstream 81221 6785649 ~ 6786055 (+)
XLOC_008303 si:ch1073-228b5.2 coding upstream 82311 6773876 ~ 6784965 (+)
XLOC_008302 CU694757.1 coding upstream 95156 6770586 ~ 6772120 (+)
XLOC_008301 CU633984.1 coding upstream 140194 6678521 ~ 6727082 (+)
XLOC_008307 foxl2a coding downstream 179206 7054754 ~ 7058214 (+)
XLOC_008308 pik3cb coding downstream 189271 7064819 ~ 7161877 (+)
XLOC_008309 her8.2 coding downstream 300634 7176182 ~ 7178865 (+)
XLOC_008310 her13 coding downstream 311680 7187228 ~ 7190183 (+)
XLOC_008311 NA coding downstream 858941 7734489 ~ 7737531 (+)
XLOC_008463 BX663520.1 misc downstream 14376643 21252191 ~ 21252282 (+)
XLOC_008299 CU655863.1 non-coding upstream 308091 6559050 ~ 6559185 (+)
XLOC_008297 NA non-coding upstream 706773 6159009 ~ 6160503 (+)
XLOC_008312 CR589941.1 non-coding downstream 930231 7805779 ~ 7805920 (+)
XLOC_008317 CR293508.2 non-coding downstream 1807274 8682822 ~ 8682937 (+)
XLOC_008318 CR293508.3 non-coding downstream 1856204 8731752 ~ 8731866 (+)
XLOC_008319 NA non-coding downstream 1886926 8762474 ~ 8765029 (+)

Expression


Co-expression Network