CI01000024_07697986_07832289 (PTPRFB, PTPRF, PTPRFA)


Basic Information

Item Value
gene id CI01000024_07697986_07832289
gene name PTPRFB, PTPRF, PTPRFA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 7697986 ~ 7832289 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_07697986_07832289.mRNA
ATGCCCAGTTTCATTAAGACTCCTGAAGATCAGACAGGGATTTCAGGAGGGGTGGCGTCCTTTGTGTGCCAGGCGGTTGGGGAGCCCAAACCACGAATCACCTGGATGAAGAAGGGCAAGAAAGTCAGCTCACAGCGCTTTGAGGTTGTAGAGTTTGATGATGGCTCAGGCTCTGTGCTACGGATCCAGCCATTACGGACACATCGAGATGAGGCCATTTATGAGTGCACAGCTACCAACAGCGTTGGAGAAATTAACACTAGCGCTAAACTTACTGTTTTAGAAGAGGACCAGATCCCTCACGGCTTCCCAACCATAGACATGGGTCCACAGCTGAAGGTGGTGGAGCGAACACGCACTGCCACCATGCTTTGTGCCGCCAGCGGGAACCCCGACCCAGAGATATCCTGGTTCAAAGACTTCCTGCCTGTCGACATTAACAGCAGCAATGGACGAATCAAACAACTCCGTTCAGGGGCGCTGCAGATCGAGAACAGCGAGGAGTCGGACCAGGGCAAGTATGAGTGTGTGGCAGTGAACAGCGCAGGAACACGCTACTCCGCTCCTGCCAACCTCTACGTCAGAGTACGGCGAGTTCCGCCACGTTTCTCAATCCCGCCCACCAATCACGAAGTGATGCCGGGCGGCAGTGTTAACCTCACCTGCGTGGCGGTGGGCGCTCCCATGCCCTACGTCAAGTGGATGAAGGGTGAACAGGAACTAACCAAAGAGGAGGAGATGCCTATTGGCCGAAATGTGCTGGAGCTCACCAACATCCGCCAGTCGGCTAACTACACCTGTGTGGCTATATCCTCCCTGGGCATGATCGACACCACAGCTCAGATCACGGTCAAAGCTCTGCCTCGCCCCCCAACCTCTCTGATCGTTACGGAAACTACCGCCACCAGTGTAACTCTAACATGGGATTCCGGCAACCCCGAACCCGTATCGTACTATGTGATTCAGTACCGGGCCAAAGTCTCGGACAACGGTTTCCAGGAAGTGGACGGAGTTGCGTCCACACGCTACAGCATCGGTGGGTTGAGTCCTTACTCTGAGTATGAATTCCGTGTCATGGCGGTCAATAACATCGGCCGCGGGCCGCCCAGCGGGTCGGTAGAGACACGAACCAGTGAACAGGCCCCCTCGTCTCCTCCCCTGCGTGTTCAGGCCCGGATGCTGAGCGCCACGACCATGCTGGTGCAGTGGGAACCTCCCGAAGAGCCCAACGGACAGATACGAGGATATCGAGTGTACTATACGTCCGACCTGCATTTCCCACTCAGCACATGGCAGAAACACAACACAGAGGACAGCAGCCTGACCACTATCTCCGGCCTGGTACCTGACATCACGTACGGCCTCCGCGTGCTGGCGTTCACCTCCGTGGGAGACGGCCCACCCTCGGACATACTGCAGGTTAAAACACAGCAAGGAGTGCCGGCCCAGCCCACCGGTTTTGAAGCAGAGGCAGAGCTCGACACTCGAATCATGCTGTCGTGGCTGTGGCCCGTCCAGGATCAGATCACCAAATATGAGCTCACATACTGGGAGGCTGACTCTGACAACAACAAGCACCACATCACCTTCAACCCAGCTGGTTCATATGCTGTTGAAGGCCTGAAGCCAGACACACTCTACAAGTTCTCACTGGCCGCGCGCTCTGAAATGGGGCTCGGGGTGTACACACAGCCTGTAGAGGCCCGGACGGCCCAGTCCACCCCGTCCGCCCCCCCACAGGAAGTGCACCTGATCAGTCTCAGCTCCACCAGCATCAAGGTGAGTTGGGCGGCTCCCCCAGCCGCCAGTCGTCACGGCAACATCGTCAGATACTCTCTGGCCTATCAGGCGGTGTCGGGCGAGGACCAGCAGCGTCATGAGGTCAAGGACATCCCAGCGGATGTGTCCAGCTATGTGCTGGAGGGGCTGGAGAAATGGACGGAGTATGTGGTGTGGGTGAAAGCGCACACCGACGTTGGGCCAGGCCCGGAGAGCGGCAGCACCCGCGTCAGAACCAGAGAGGATGTGCCTGGCGCCCCTCCACGCAAGGTTGAGGTGGACAACGTGAACTCCACGGCCCTGCGGGTGTCGTGGAAACCTCCTCTGCAGCAGAAGCAGCATGGACAGATCCGCGGGTATCAGGTGGTTTACTCCCGGCTGGAGAACGGAGAGCCACGCGGGCAGCCCATCATACTGGACGTCGCCCTGCCTGAGGCGCAGGAGGCCATCATCACTGGCCTGCTGGCTGAAACGACATATTCTGTTACTGTGGCGGCATACACCACTAAAGGAGACGGAGCACGGAGCAAAGCCAAAGTAGTGACCACAACTGGGGCAGTTCCAGGCAAGCCCACCATGATCATTAGCACCACCATTGGGAACACAGCTCTGATCCAGTGGCAGCCCCCTAAAGAGATGGTGGGCGAACTGATGGGCTACAGACTCCGCTACAAGCGTGAAGAGGAGGAGACCTACACCACCCGTGACTTCAGACGCACCGATGACCACTTCACCGTCACCGGCCTGCACAAGGGCGCCACCTACATTTTCAAGCTCTGCGCCAAGAACCGCGCAGGAAACGGAGAGGAGTACAGCAAAGAGATCAGCACCCCAGATGACGTCCCCAGCAGCTACCCACAAAACCTCAGAGTGGTGGGCCTGACGACCACCACTACCAAACTGGCCTGGGAACCCCCGCCTCTGCCCGAGAGGAATGGGAAAATCGTACGCTACGTGGTGGTGTACCGTGACATCAACAGCCATCAGAACCAGACCAACGGTACCGCAGAGACGCAAATGACCATCCACGGTCTTCAGCCGGACACCACCTATGATATCCGAGTGAGAGCGTTCACGGGGAAAGGAGGGGGTCCGATAAGCCCCAGTATTCAAAGCAGAACCATGTCTACCTCCATGCCTGAGTTCACTAAAAACTTTGGTGTGAAAGCTGTGATGAAGACATCTGTCCTGCTCACATGGGAGGTACCAGAAACCTACAAGTCCCAAGTGCCTTTCAAGATCCTGTATAACCAGCAGAGCGTTGAGGTGCAGGGCGACCTGAAGAGGAAGTTGATCACACGGCTGCAGCCGGACACCGATTACTCCTTTGTGCTGATGAGCCGAGGGAACAGCGCCGGTGGACTGCAGCAGCAGGTCTCCATCCGCACCGCCCCAGACCTGTTTACTACCAAACCGACCCACCATAAACAAGACCCAGAGGAGGGCGGCAAACTCACCATCACACTGCCCAAAGTGCACAACAGCGCCCTCGTCAGGTGCTTTTATATAGTGGTGGTACCAGTAACTACATCAACTCTACGCCGCTGGGAAAACCCAGAGGATATGGATCTGGATGAGCTTTTGGGGAGTAATGGAGACTCAGATGTAAATAAGAGGAGAAGGAGACAAACTCAGGACTTCCTGCGGCCTTACATCGCTGCCAAGTTGGACTATCTTCCAGAAACCTTTGTGTTAGGAGACGAGAAAACTTACAATGGCTTCTATAACAAACCTCTACCTGGACAGCAGCAGTACCGCACGTTTATACTGGCAGCACTGAAAGACCGGGACTCAATGTTCACAGTGAGTCCTTACTCTGATCCCATGATGGTGAAGCTCCACAGCGGGATGTCCCGTCACGTTGAGGACCCAGAGATGCTGTGGGTTATGGGACCAGTGCTGGCCGTCGTCCTCATCATCATCATCGTCATTGCCATCCTGCTCTTCAAGAGGAAGCGCTCCTCTCCCTCGGCTAAAGATGAGCACTCAGCTGGAGTTAAAGATCACTTGCTGGCCAATTCCTCTGACCCGGTGGAAATGAGGAGGCTCAACTACCAGACACAAGGAATGCGGGAACACCCTCCAGTTTCTGTCTGTGCTTTGGCTGACCACATTGAGCGGCTGAAAGCCAACGACGGCCTACGCTTCTCACAGGAATATGAGTCTATTGACCCTGGCCAGCAGTTCACCTGGGAGAACTCCAACCTAGAGGTCAACAAGCCCAAGAACCGCTATGCAAACGTCATCGCTTATGATCACTCTAGAGTCGTGCTGACTCCCGTTGATGGTGTACCGGGAAGTGATTACATCAATGGCAACTACATTGACGGCTACCGCAAGCAGAACGCCTACATCGCCACTCAAGGTCCTTTGCCTGAGACACTCAGTGACTTCTGGAGGATGGTGTGGGAGCAGAGGACCAACACTATCGTCATGATGACCAGACTGGAGGAGAAGAGCAGGGTGAAGTGCGATCAGTACTGGCCGAGCCGTGGAACAGAAACATACGGCATGATTCAAGTGTCCATGTTGGATACAGTGGAATTGGCCACCTACAGCGTCAGAACCTTCGCTCTCTATAAGAATGGATCCAGTGAGAAACGGGAAGTTCGGCAGTTCCAGTTCATGGCCTGGCCGGATCACGGTGTTCCCGAATACCCTACACCAATTTTAGCCTTTCTACGCAGGGTCAAGGCTTGCAACCCACCTGACGCCGGACCCATGGTGGTTCACTGCAGCGCTGGCGTGGGTCGGACAGGCTGTTTTATCGTAATAGAGGCCATGCTTGAGCGGATGAAGCACGAGCAGTCGGTGGATATCTATGGTCACGTGACCTGCATGCGCGCTCAGAGGAACTACATGGTGCAGACGGAAGATCAGTATATCTTCATCCACGAGGCCCTCCTGGAGGCCGCCACCTGTGGGAACACGGAGGTCCCTGCGCGGAGCCTGTACACACACATCCAGAAACTCACTCAGGTGTCGCCCGGAGACACTGTCACCGCCATGGAACTGGAGTTTAAGAAACTGGCCAACTCTAAAGCACACACCTCCAGATTCATCAGCGCTAGTCTGCCATGCAACAAATTCAAGAACCGACTGGTCAACATCATGCCCTTCGAGTCCAGCCGTGTGTGTCTGCAGCCAATCAGGGGGGTGGAGGGGTCCGACTACATTAACGCCAGCTTCATCGATGGATACAGGCAGCAGAAGGCGTATATCGCCACACAAGGTCCGCTGTCTGAAACCACAGAGGACTTCTGGAGGATGCTGTGGGAGCATAACTCCACCATTGTGGTGATGCTGACGAAGCTCAGAGAGATGGGACGGGAGAAGTGTCATCAGTACTGGCCTGCAGAGAGATCTGCGCGCTACCAGTACTTCGTTGTGGATCCCATGGCTGAATACAACATGCCGCAGTACATCTTACGAGAGTTTAAAGTCACAGATGCCAGGGATGGCCAGTCTAGGACGATCCGCCAGTTTCAGTTCACCGATTGGCCAGAACAAGGCGTGCCAAAGACAGGAGAGGGCTTTATTGATTTCATTGGCCAAGTCCACAAAACCAAGGAGCAGTTTGGACAGGACGGACCAATTACTGTTCACTGCAGTGCTGGTGTCGGCAGAACAGGAGTCTTCATCACTTTAAGTATTGTTTTGGAGCGGATGAGGTATGAAGGTGTGGTGGACATGTTCCAGACCATAAAAACGCTCCGCACGCAGAGACCTGCCATGGTACAGACAGAGGACCAGTACCAGCTGTGCTACAGAGCAGCTCTGGAGTACCTTGGCAGCTTCGATCACTATGCAACG

Function

symbol description
ptprfa Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within sensory neuron axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system; pectoral fin; pharyngeal arch; and somite. Human ortholog(s) of this gene implicated in hyperinsulinism. Orthologous to human PTPRF (protein tyrosine phosphatase receptor type F).
ptprfb Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within sensory neuron axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver and nervous system. Human ortholog(s) of this gene implicated in hyperinsulinism. Orthologous to human PTPRF (protein tyrosine phosphatase receptor type F).
ptprf Enables cell adhesion molecule binding activity and protein tyrosine phosphatase activity. Involved in several processes, including negative regulation of receptor binding activity; peptidyl-tyrosine dephosphorylation; and synaptic membrane adhesion. Located in extracellular exosome. Implicated in hyperinsulinism. Biomarker of obesity.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K05695 PTPRF, LAR; receptor-type tyrosine-protein phosphatase F

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_07697986_07832289.mRNA True 5592 mRNA 0.55 30 7697986 7832289

Neighbor

gene id symbol gene type direction distance location
CI01000024_07672858_07695341 KDM4AB, KDM4A coding downstream 2161 7672593 ~ 7695825 (-)
CI01000024_07604312_07619531 ST3GAL3, ST3GAL3A, ST3GAL3B coding downstream 78455 7604312 ~ 7619531 (-)
CI01000024_07566408_07567250 NA coding downstream 130736 7566278 ~ 7567250 (-)
CI01000024_07549529_07561249 RAD54L coding downstream 136737 7549515 ~ 7561249 (-)
CI01000024_07533115_07535965 NA coding downstream 161596 7532364 ~ 7536390 (-)
CI01000024_07847824_07855700 NA coding upstream 15284 7847573 ~ 7856341 (-)
CI01000024_07858315_07901816 NA coding upstream 25868 7858157 ~ 7901938 (-)
CI01000024_08161023_08259943 SZT2 coding upstream 328001 8160290 ~ 8259943 (-)
CI01000024_08260814_08264845 SZT2 coding upstream 428525 8260814 ~ 8264845 (-)
CI01000024_08292984_08380058 PBX1.S, PBX1A, PBX1B, PBX1 coding upstream 460695 8292984 ~ 8380058 (-)
G125763 NA non-coding downstream 30794 7666916 ~ 7667192 (-)
G125761 NA non-coding downstream 33328 7664450 ~ 7664658 (-)
G125760 NA non-coding downstream 35356 7662420 ~ 7662630 (-)
G125721 NA non-coding downstream 94815 7602349 ~ 7603171 (-)
G125732 NA non-coding downstream 158373 7537657 ~ 7539613 (-)
G125724 NA non-coding upstream 73625 7905914 ~ 7916099 (-)
G125722 NA non-coding upstream 84515 7916804 ~ 7935557 (-)
G125798 NA non-coding upstream 143502 7975667 ~ 7976047 (-)
G125801 NA non-coding upstream 148569 7980858 ~ 7981094 (-)
G125457 NA other downstream 339882 7357237 ~ 7358104 (-)
CI01000024_03938368_03941795 NA other downstream 3756062 3938315 ~ 3941924 (-)
G123233 NA other downstream 5142950 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 6871135 824968 ~ 838550 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004944 NA coding CM030140.1 CM030140.1 10676345 ~ 10716200 (+)